Evaluation framework for computationally inferred gene networks from single-cell data.
☆20Oct 23, 2025Updated 10 months ago
Alternatives and similar repositories for gene_network_evaluation
Users that are interested in gene_network_evaluation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Updated this week
- Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.☆20Oct 10, 2024Updated last year
- Pipeline to run scE2G☆65Sep 1, 2026Updated 2 weeks ago
- surrogate quantitative interpretability for deepnets☆26Aug 28, 2026Updated 3 weeks ago
- ☆12Oct 4, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13Sep 3, 2025Updated last year
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆29Feb 21, 2023Updated 3 years ago
- ☆36Sep 7, 2026Updated last week
- Code to reproduce analysis of Milo manuscript☆16Aug 3, 2022Updated 4 years ago
- Custom code for processing Parse Bio snRNA-seq data generated by the Mortazavi lab at UCI☆22Oct 5, 2025Updated 11 months ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆14Nov 14, 2020Updated 5 years ago
- ☆19Oct 17, 2024Updated last year
- Flexible, scalable, sc molQTL analyses using generalized linear models implemented in JAX☆20Updated this week
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scripts to reproduce analyses of tradeSeq paper.☆16Feb 5, 2020Updated 6 years ago
- eqtl analysis pipeline using tensorqtl, saige-qtl, LIMIX, quasar and jaxQTL☆18Feb 3, 2026Updated 7 months ago
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated last year
- Source code and binaries for the SOAP2 alignment tool developed by BGI.☆10Dec 22, 2023Updated 2 years ago
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated last month
- GitHub template repository for creating new barebones Nextflow pipelines, using the Arcadia-Science/nextflow-template cookiecutter templa…☆13Mar 21, 2023Updated 3 years ago
- ☆20Jan 18, 2023Updated 3 years ago
- ☆46Aug 17, 2026Updated last month
- A Cellular Regulatory Network-Aware Transcriptomics Foundation Model☆38Dec 18, 2025Updated 9 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆42Jun 8, 2026Updated 3 months ago
- Single cell omics biology annotations☆62Sep 2, 2026Updated 2 weeks ago
- development of network co-localization tool☆18Sep 9, 2026Updated last week
- ☆19Oct 21, 2024Updated last year
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- ☆27Apr 15, 2025Updated last year
- ☆30Apr 13, 2026Updated 5 months ago
- Pipeline for harmonising immunological receptor–epitope interactions☆17Sep 2, 2026Updated 2 weeks ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆199Aug 24, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Single-Cell Clustering Assessment Framework☆112Oct 27, 2023Updated 2 years ago
- Auto-annotations from Mouse brain development☆12Jul 11, 2020Updated 6 years ago
- ☆17Jan 30, 2026Updated 7 months ago
- Scalable framework for integrating single-cell omics with genetic data using AnnData.☆21Updated this week
- ☆63Jul 12, 2026Updated 2 months ago
- ☆28Updated this week
- Robust and efficient analysis of single-cell perturbation studies☆16Updated this week