Evaluation framework for computationally inferred gene networks from single-cell data.
☆20Oct 23, 2025Updated last year
Alternatives and similar repositories for gene_network_evaluation
Users that are interested in gene_network_evaluation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Updated this week
- Scripts to reproduce analyses of tradeSeq paper.☆17Feb 5, 2020Updated 6 years ago
- Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.☆23Oct 10, 2024Updated 2 years ago
- Paulsen, Velasco, Kedaigle, and Pigioni et. al., Nature 2022☆14Oct 26, 2020Updated 6 years ago
- ☆12Oct 4, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆14Sep 3, 2025Updated last year
- Modeling complex perturbations with CellFlow☆11Jul 17, 2026Updated 3 months ago
- Pipeline to run scE2G☆69Updated this week
- Repository for Ruff, King et al. Molecular grammars of predicted intrinsically disordered regions that span the human proteome☆20Dec 29, 2025Updated 10 months ago
- surrogate quantitative interpretability for deepnets☆27Aug 28, 2026Updated 2 months ago
- ☆36Sep 7, 2026Updated last month
- Code to reproduce analysis of Milo manuscript☆16Aug 3, 2022Updated 4 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆32Feb 21, 2023Updated 3 years ago
- Custom code for processing Parse Bio snRNA-seq data generated by the Mortazavi lab at UCI☆23Oct 5, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆14Nov 14, 2020Updated 5 years ago
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 6 months ago
- ☆20Oct 17, 2024Updated 2 years ago
- Source code and binaries for the SOAP2 alignment tool developed by BGI.☆10Dec 22, 2023Updated 2 years ago
- eqtl analysis pipeline using tensorqtl, saige-qtl, LIMIX, quasar and jaxQTL☆18Feb 3, 2026Updated 8 months ago
- GitHub template repository for creating new barebones Nextflow pipelines, using the Arcadia-Science/nextflow-template cookiecutter templa…☆13Mar 21, 2023Updated 3 years ago
- Flexible, scalable, sc molQTL analyses using generalized linear models implemented in JAX☆20Oct 12, 2026Updated 2 weeks ago
- A Cellular Regulatory Network-Aware Transcriptomics Foundation Model☆38Dec 18, 2025Updated 10 months ago
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Interpret perturbation responses from scRNA-seq perturbation experiments☆20Mar 4, 2025Updated last year
- Causal inference, differential expression, and co-expression for scRNA-seq☆22Jun 11, 2026Updated 4 months ago
- ☆21Jan 18, 2023Updated 3 years ago
- ☆50Aug 17, 2026Updated 2 months ago
- ☆42Jun 8, 2026Updated 4 months ago
- development of network co-localization tool☆18Sep 21, 2026Updated last month
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- Single cell omics biology annotations☆63Sep 2, 2026Updated last month
- Auto-annotations from Mouse brain development☆12Jul 11, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Phenotype Aware Components Analysis is a contrastive learning approach leveraging CCA to robustly capture weak sources of subphenotypic v…☆11Oct 21, 2025Updated last year
- ☆63Jul 12, 2026Updated 3 months ago
- ☆31Updated this week
- ☆19Oct 21, 2024Updated 2 years ago
- ☆18Jan 30, 2026Updated 9 months ago
- Single-Cell Clustering Assessment Framework☆111Oct 27, 2023Updated 3 years ago
- This repository is unmaintained. Active successor: https://github.com/TianzeLab/pandasGWAS2☆18Oct 23, 2026Updated last week