EngreitzLab / gene_network_evaluationLinks
Evaluation framework for computationally inferred gene networks from single-cell data.
☆13Updated 4 months ago
Alternatives and similar repositories for gene_network_evaluation
Users that are interested in gene_network_evaluation are comparing it to the libraries listed below
Sorting:
- An end-to-end computational pipeline for large Perturb-seq screens☆13Updated last month
- Gene regulatory network inference for RNA velocity and pseudotime data☆26Updated 2 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 4 months ago
- ☆40Updated last week
- The scripts used for the analyses in TOME project☆24Updated 6 months ago
- ACTIONet single-cell analysis framework☆41Updated 8 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆21Updated last month
- Pipeline to run scE2G☆26Updated last week
- ☆26Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆27Updated 5 months ago
- This repository contains codes used for the human fetal limb cell atlas.☆16Updated 4 months ago
- ☆20Updated 2 weeks ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆39Updated this week
- ☆15Updated last month
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆38Updated last week
- Benchmark of GRNs using the GRETA pipeline☆24Updated 2 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- ☆23Updated 2 months ago
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆12Updated last year
- Epigenomics Program pipeline to analyze SHARE-seq data.☆21Updated 2 months ago
- Molecular interactions inference from single-cell multi-omics data☆24Updated this week
- A method for analyzing scATAC-seq experiments.☆30Updated 3 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆51Updated this week
- ☆11Updated 2 years ago
- ☆26Updated 8 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆43Updated 6 months ago
- Single cell omics biology annotations☆51Updated last month
- ☆45Updated last year
- ☆51Updated 7 months ago