Alternatives and similar repositories for gene_network_evaluation

Users that are interested in gene_network_evaluation are comparing it to the libraries listed below

• EraslanBas / PerturbDecode
  An end-to-end computational pipeline for large Perturb-seq screens
  ☆13Updated 2 months ago
• Teichlab / limbcellatlas
  This repository contains codes used for the human fetal limb cell atlas.
  ☆16Updated 5 months ago
• YosefLab / velovi
  ☆40Updated last week
• Papatheodorou-Group / BENGAL
  Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets
  ☆39Updated last year
• Roy-lab / scMTNI
  ☆27Updated 2 weeks ago
• rorymaizels / velvetVAE
  Variational Estimation of Latent Velocity from Expression with Time-resolution
  ☆12Updated last year
• cantinilab / Circe
  Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).
  ☆21Updated last week
• shtoneyan / gopher
  Toolset for training quantitative sequence to function models.
  ☆23Updated last year
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 5 months ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated 9 months ago
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆27Updated 3 months ago
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆26Updated last week
• ChengxiangQiu / tome_code
  The scripts used for the analyses in TOME project
  ☆24Updated 7 months ago
• HYsxe / PRINT
  ☆35Updated 9 months ago
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
  ☆43Updated 7 months ago
• aertslab / scenicplus_analyses
  SCENIC+ analyses
  ☆14Updated last year
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆25Updated 3 weeks ago
• cellatlas / human
  ☆43Updated 8 months ago
• aertslab / CREsted
  CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…
  ☆41Updated last week
• dpeerlab / scKINETICS
  Code for scKINETICS (ISMB 2023)
  ☆21Updated last year
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 2 months ago
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆31Updated last week
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆63Updated last year
• buenrostrolab / PRINT
  ☆15Updated last month
• broadinstitute / epi-SHARE-seq-pipeline
  Epigenomics Program pipeline to analyze SHARE-seq data.
  ☆22Updated 3 months ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆35Updated 2 years ago
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆44Updated last week
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆24Updated 3 months ago
• zhanglhbioinfor / DIRECT-NET
  ☆11Updated 2 years ago