Alternatives and similar repositories for awesome-complex-trait-genetics

Users that are interested in awesome-complex-trait-genetics are comparing it to the libraries listed below

• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆72Updated last week
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated last month
• zhilizheng / SBayesRC
  ☆36Updated 10 months ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 4 years ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆53Updated 4 years ago
• meyer-lab-cshl / plinkQC
  R package for quality control of plink genetic datasets
  ☆59Updated 2 weeks ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆45Updated last year
• josefin-werme / LAVA
  ☆69Updated 11 months ago
• astheeggeggs / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆19Updated 2 years ago
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆51Updated 3 years ago
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆116Updated this week
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆66Updated 8 months ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆54Updated last year
• Al-Murphy / MungeSumstats
  Rapid standardisation and quality control of GWAS or QTL summary statistics
  ☆81Updated this week
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆29Updated last year
• xihaoli / STAAR
  An R package for performing STAAR procedure in whole-genome sequencing studies
  ☆93Updated 4 months ago
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆85Updated 7 months ago
• gamazonlab / MR-JTI
  ☆57Updated 5 months ago
• comorment / containers
  CoMorMent-Containers
  ☆29Updated 3 months ago
• EBISPOT / gwas-sumstats-harmoniser
  GWAS Summary Statistics Data Harmonisation
  ☆23Updated last week
• precimed / mixer
  Causal Mixture Model for GWAS summary statistics
  ☆77Updated last year
• chr1swallace / coloc
  Repo for the R package coloc
  ☆168Updated 2 months ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆48Updated 2 months ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last week
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆27Updated this week
• pjgreer / ukb-rap-tools
  Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform
  ☆63Updated 2 weeks ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆76Updated this week
• weizhou0 / GATE
  ☆22Updated last year
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated last week