MichelNivard / awesome-complex-trait-genetics
A list of awesome tools for complex trait genetics.
☆63Updated this week
Alternatives and similar repositories for awesome-complex-trait-genetics:
Users that are interested in awesome-complex-trait-genetics are comparing it to the libraries listed below
- Analyses conducting GWAS across the UKBB diverse superpopulations☆48Updated 3 months ago
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 3 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆44Updated last year
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆29Updated last year
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆41Updated 6 years ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆28Updated 7 months ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆55Updated 3 months ago
- R package for quality control of plink genetic datasets☆57Updated 3 weeks ago
- Statistical tools for Quantitative Genetic Analyses☆35Updated 3 weeks ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆18Updated 2 years ago
- corrplot of LDSC genetic correlation results☆48Updated 2 years ago
- GWAS Summary Statistics Data Harmonisation☆22Updated 2 weeks ago
- ☆34Updated 4 years ago
- methods for functional summary-based imputation☆78Updated 2 years ago
- Colocalization analysis of genetic association signals☆50Updated 2 months ago
- Genotype-based Prediction (GenoPred)☆69Updated this week
- Partners Biobank genomics data QC☆25Updated 4 years ago
- Main ricopili repo for public releases☆43Updated this week
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆46Updated 3 years ago
- ☆58Updated 6 months ago
- Sequence kernel association test (SKAT)☆44Updated last year
- High-definition likelihood inference of genetic correlations (HDL)☆101Updated 2 weeks ago
- Make LocusZoom-like plots with your own LD matrix.☆38Updated 2 years ago
- Imputation of parental genotypes, inference of sibling IBD segments, family based GWAS, and polygenic score analyses.☆24Updated last month
- Development for SAIGE and SAIGE-GENE(+)☆69Updated 3 weeks ago
- Visualization of Colocalization Between eQTL and GWAS Data☆78Updated 2 years ago
- Code and simulations using interaction-LD score regression☆13Updated 6 months ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆100Updated last month
- harmonization, liftover, and imputation of summary statistics from GWAS☆31Updated 4 years ago
- ☆27Updated 5 months ago