Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types
☆39Oct 13, 2021Updated 4 years ago
Alternatives and similar repositories for onek1k_phase1
Users that are interested in onek1k_phase1 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An introductory course to eQTL analysis.☆10Jul 11, 2025Updated 10 months ago
- Visualization of Colocalization Between eQTL and GWAS Data☆88May 13, 2022Updated 4 years ago
- ☆13Dec 14, 2023Updated 2 years ago
- ☆20Jul 28, 2025Updated 9 months ago
- S-LDSC scripts for use on MR server.☆10Sep 23, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆19Mar 11, 2024Updated 2 years ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆23Jul 6, 2023Updated 2 years ago
- R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"☆17Oct 7, 2025Updated 7 months ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago
- ☆18Oct 4, 2023Updated 2 years ago
- ☆18May 15, 2025Updated last year
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆17Oct 5, 2024Updated last year
- Gene Set + S2G strategy annotations analyzed for disease architecture☆59Nov 18, 2022Updated 3 years ago
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Software to infer latent pleiotropic components from GWAS summary data☆16Jan 30, 2025Updated last year
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆75Feb 4, 2021Updated 5 years ago
- ☆15Apr 20, 2021Updated 5 years ago
- ☆14Mar 17, 2022Updated 4 years ago
- QTL Discovery using Annotations☆29Dec 12, 2022Updated 3 years ago
- GPA: Genetic analysis incorporating Pleiotropy and Annotation☆16Feb 27, 2020Updated 6 years ago
- Collection of analysis tools for quantitative trait loci☆65Apr 26, 2026Updated 3 weeks ago
- snakemake-based workflows☆12Jul 20, 2022Updated 3 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Jun 28, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.☆16Oct 3, 2024Updated last year
- Toolkit for analyzing genetics data from admixed populations☆30Feb 13, 2025Updated last year
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Oct 6, 2023Updated 2 years ago
- BWMR (Bayesian Weighted Mendelian Randomization)☆22Jun 14, 2023Updated 2 years ago
- ☆23Sep 23, 2022Updated 3 years ago
- DiffNetFDR☆10Sep 12, 2018Updated 7 years ago
- ☆37Jun 15, 2023Updated 2 years ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Sep 30, 2022Updated 3 years ago
- An automated pipeline for processing DamID sequencing datasets☆16Aug 28, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Apr 24, 2020Updated 6 years ago
- ☆11Feb 10, 2025Updated last year
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆94Sep 26, 2023Updated 2 years ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12May 22, 2025Updated 11 months ago
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆19Mar 30, 2021Updated 5 years ago
- ggplot2-based Manhattan plot☆12Oct 18, 2022Updated 3 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆12Apr 3, 2025Updated last year