powellgenomicslab / onek1k_phase1
Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types
☆24Updated 3 years ago
Alternatives and similar repositories for onek1k_phase1:
Users that are interested in onek1k_phase1 are comparing it to the libraries listed below
- ☆25Updated 6 months ago
- ☆20Updated 6 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- Robust Allele Specific Quantification and quality controL☆38Updated 3 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- ☆21Updated 3 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆42Updated 11 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆43Updated 3 years ago
- ☆12Updated 6 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated last year
- ☆35Updated 10 months ago
- ☆18Updated 10 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- ☆15Updated 7 months ago
- A pipeline for scRNA-seq data analysis☆12Updated last year
- ☆11Updated 6 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆76Updated 2 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆29Updated 2 months ago
- Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria para…☆10Updated 7 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated this week
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆16Updated last month
- ☆17Updated 3 years ago