powellgenomicslab / onek1k_phase1Links
Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types
☆38Updated 4 years ago
Alternatives and similar repositories for onek1k_phase1
Users that are interested in onek1k_phase1 are comparing it to the libraries listed below
Sorting:
- ☆35Updated this week
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆12Updated 9 months ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 5 years ago
- R package of colors for the Buenrostro Lab☆86Updated last year
- Colocalization analysis of genetic association signals☆53Updated 7 months ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- ☆37Updated 4 years ago
- Quality control steps for GWAS☆26Updated 2 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆35Updated 6 months ago
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆35Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆58Updated 3 years ago
- Fast, integrative fine mapping with functional data☆61Updated 6 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- Helper tools for popscle☆21Updated 2 years ago
- ☆87Updated 4 years ago
- ☆50Updated 3 weeks ago
- ☆24Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆62Updated 2 months ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated 2 years ago
- ☆20Updated 5 months ago
- An R package to time somatic mutations☆65Updated 5 years ago
- ☆18Updated last year
- Mediated Expression Score Regression (MESC)☆27Updated 2 months ago
- A pipeline for scRNA-seq data analysis☆15Updated 9 months ago
- Clone of the Bioconductor repository for the DropletUtils package.☆64Updated 4 months ago
- ATAC-seq processing pipeline☆34Updated 3 years ago