ckhunsr1 / PUMICE
PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
☆12Updated last year
Alternatives and similar repositories for PUMICE:
Users that are interested in PUMICE are comparing it to the libraries listed below
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated 9 months ago
- ☆18Updated 11 months ago
- An R package for creating ggplot2 based miami plots.☆16Updated 10 months ago
- This is a pipeline for calculating weights for TWAS☆30Updated 2 years ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Updated last year
- Estimate genetic correlation using predicted expression☆21Updated 6 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated last year
- Regional association plots☆25Updated 9 months ago
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆13Updated 2 months ago
- Integration of TWAS and Colocalization Analysis☆14Updated 3 months ago
- GENI plots to visualise results from genome-wide association studies☆27Updated 3 months ago
- Create Regional Association Plots☆11Updated 6 months ago
- GWAS genetics Fine-mapping method☆21Updated 3 months ago
- SCALLOP-INF analysis☆20Updated 4 months ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆30Updated 5 months ago
- ☆11Updated 2 years ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆14Updated 3 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆31Updated 4 years ago
- MR-link 2 is a summary statistics _cis_ MR method that is pleiotropy robust.☆13Updated last month
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆20Updated this week
- pQTL tools☆18Updated last week
- ☆14Updated 3 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆15Updated 3 years ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆33Updated 4 months ago
- A powerful TWAS framework leveraging summary-level reference data☆26Updated 2 weeks ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆41Updated 6 years ago
- Regional association plots☆25Updated 9 months ago
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆23Updated 3 years ago
- Perform cell-stratified MR analysis through integrating GWAS and QTL data☆24Updated 3 months ago
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆11Updated 2 years ago