ckhunsr1 / PUMICELinks
PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
☆12Updated last year
Alternatives and similar repositories for PUMICE
Users that are interested in PUMICE are comparing it to the libraries listed below
Sorting:
- This is a pipeline for calculating weights for TWAS☆32Updated 3 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated last month
- Integration of TWAS and Colocalization Analysis☆17Updated 10 months ago
- ☆19Updated 3 weeks ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Updated 2 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated 2 years ago
- ☆16Updated this week
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆11Updated 2 years ago
- R script to make Manhattan-style plot for TWAS☆39Updated 4 years ago
- Estimate genetic correlation using predicted expression☆22Updated 7 years ago
- Create Regional Association Plots☆12Updated last year
- An R package for creating ggplot2 based miami plots.☆17Updated 5 months ago
- A powerful TWAS framework leveraging summary-level reference data☆31Updated 4 months ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆41Updated 7 years ago
- Fine-mapping method only using summary statistics☆20Updated 9 years ago
- R script that performs gene-set or gene property analysis using TWAS results.☆32Updated 11 months ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆37Updated 6 months ago
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆27Updated last month
- ☆15Updated 4 years ago
- Regional association plots☆25Updated last year
- GENI plots to visualise results from genome-wide association studies☆30Updated 10 months ago
- R script for generating functionally informed genetic risk scores from TWAS☆11Updated 2 years ago
- MR-link-2: pleiotropy robust cis MR☆20Updated 3 weeks ago
- Workflow for performing cistrome-wide associations studies☆10Updated 3 years ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆36Updated 11 months ago
- Tool for predicting TWAS features (e.g. gene expression) in a target sample☆16Updated 2 months ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆28Updated last week
- harmonization, liftover, and imputation of summary statistics from GWAS☆33Updated 5 years ago
- Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.☆19Updated 2 months ago
- S-LDSC scripts for use on MR server.☆10Updated 3 years ago