ckhunsr1 / PUMICELinks
PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
☆12Updated last year
Alternatives and similar repositories for PUMICE
Users that are interested in PUMICE are comparing it to the libraries listed below
Sorting:
- This is a pipeline for calculating weights for TWAS☆32Updated 3 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated 2 months ago
- ☆19Updated last month
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Updated 2 years ago
- Integration of TWAS and Colocalization Analysis☆17Updated 10 months ago
- ☆19Updated last week
- Estimate genetic correlation using predicted expression☆22Updated 7 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated 2 years ago
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆11Updated 3 years ago
- An R package for creating ggplot2 based miami plots.☆17Updated 6 months ago
- Create Regional Association Plots☆12Updated last week
- A powerful TWAS framework leveraging summary-level reference data☆31Updated 5 months ago
- R script to make Manhattan-style plot for TWAS☆40Updated 4 years ago
- GENI plots to visualise results from genome-wide association studies☆30Updated 11 months ago
- ☆15Updated 4 years ago
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆27Updated last month
- R script that performs gene-set or gene property analysis using TWAS results.☆32Updated last year
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆41Updated 7 years ago
- Tool for predicting TWAS features (e.g. gene expression) in a target sample☆16Updated 2 months ago
- Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.☆19Updated 2 weeks ago
- The local version of high-definition likelihood inference of genetic correlations (HDL-L)☆11Updated last month
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆37Updated 11 months ago
- R script for generating functionally informed genetic risk scores from TWAS☆11Updated 2 years ago
- Regional association plots☆25Updated last year
- 🌓 Allele specific analyses across cell states and conditions☆10Updated 2 years ago
- ☆18Updated last month
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆17Updated 3 months ago
- Workflow for performing cistrome-wide associations studies☆10Updated 3 years ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆37Updated 7 months ago
- MR-link-2: pleiotropy robust cis MR☆20Updated last month