RoseYuan / sc_chromatin_benchmarkLinks
Benchmarking computational methods for single-cell ATAC-seq and CUT&Tag
☆16Updated last year
Alternatives and similar repositories for sc_chromatin_benchmark
Users that are interested in sc_chromatin_benchmark are comparing it to the libraries listed below
Sorting:
- scGRO-seq analyses codes☆13Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- scover☆24Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Pairwise Hierarchical Model☆20Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- Exon-Intron Split Analysis (EISA) in R☆16Updated this week
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆15Updated 4 months ago
- ☆18Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 7 months ago
- SCASA: Single cell transcript quantification tool☆22Updated last year
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated last week
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- A simple, intuitive and Efficient single cell binary Data Storage format☆15Updated 6 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated last year
- Fast motif matching in R☆46Updated last year
- binned motif enrichment analysis and visualisation☆42Updated this week
- Explore the cancer relevance of your gene list☆52Updated last month
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- Create QC and summary reports for Alevin output☆31Updated 3 months ago