pinellolab / CRISPR_PipelineLinks
☆13Updated this week
Alternatives and similar repositories for CRISPR_Pipeline
Users that are interested in CRISPR_Pipeline are comparing it to the libraries listed below
Sorting:
- ☆56Updated 2 months ago
- R package to access DoRothEA's regulons☆152Updated last year
- Clonotype Neighbor Graph Analysis☆93Updated 3 months ago
- Using TCR and expression for sequence embedding☆60Updated 3 months ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆195Updated 3 months ago
- Pipeline to run scE2G☆31Updated last month
- ☆84Updated this week
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆25Updated 3 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆121Updated this week
- Direct estimation of mean and covariance from single cell RNA seq experiments☆124Updated 7 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆78Updated 3 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆68Updated last year
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆111Updated 2 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆124Updated 2 weeks ago
- An R package for ECM molecule annotation, classification, and analysis☆12Updated last year
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆52Updated last week
- Ultrafast TCR clustering algorithm based on geometric isometry☆69Updated last year
- Single cell omics biology annotations☆50Updated 7 months ago
- Tools for single-cell data processing☆129Updated last year
- Multi-omic velocity inference☆113Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆80Updated 7 months ago
- A tool for semi-automatic cell type harmonization and integration☆117Updated last month
- R package for CS-CORE, a statistical method for cell-type-specific co-expression inference from single cell RNA-sequencing data☆22Updated last month
- Predict RNA velocity through deep learning☆71Updated 2 years ago
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆85Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 10 months ago
- Unified access to several second-generation deconvolution methods☆88Updated last month
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated last week
- SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/☆23Updated 4 years ago