☆16Aug 8, 2026Updated this week
Alternatives and similar repositories for CRISPR_Pipeline
Users that are interested in CRISPR_Pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tool package to perform in-silico CRISPR analysis and assessment☆42Updated this week
- Evaluation framework for computationally inferred gene networks from single-cell data.☆19Oct 23, 2025Updated 9 months ago
- Robust and efficient analysis of single-cell perturbation studies☆15Updated this week
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated last week
- Pipeline to run scE2G☆53Aug 1, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Causal inference, differential expression, and co-expression for scRNA-seq☆21Jun 11, 2026Updated last month
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆39Updated this week
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆14Nov 14, 2020Updated 5 years ago
- Scripts to reproduce analyses of tradeSeq paper.☆16Feb 5, 2020Updated 6 years ago
- GitHub template repository for creating new barebones Nextflow pipelines, using the Arcadia-Science/nextflow-template cookiecutter templa…☆13Mar 21, 2023Updated 3 years ago
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆13Jul 31, 2026Updated last week
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 3 years ago
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 5 years ago
- Image-based Profiling Handbook☆11Apr 15, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tao Yan's Plot Toolkit☆12Aug 20, 2019Updated 6 years ago
- SPROUT is a machine learning tool to predict the DNA repair outcome in CRISPR experiments.☆16Jul 17, 2021Updated 5 years ago
- machine-readable file format for genomic library sequence and structure☆130Jul 15, 2026Updated 3 weeks ago
- A preliminary attempt at complete automation of bioinformatics☆12Feb 17, 2025Updated last year
- R scripts for NGS data visualization☆13Oct 1, 2025Updated 10 months ago
- ☆14Sep 17, 2021Updated 4 years ago
- Fast algorithms for GLM-PCA.☆17Mar 12, 2025Updated last year
- Benchmark of GRNs using the GRETA pipeline☆33Jun 9, 2026Updated 2 months ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆17Feb 6, 2026Updated 6 months ago
- Biology-centered data-driven quality control for scRNA-seq☆21May 22, 2023Updated 3 years ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- ☆42Jan 19, 2026Updated 6 months ago
- This repo is mainly for beginners to intermediate level ML/Bioiniformatics engineers/students/enthusiasts. It mainly focus on creating a …☆15Dec 28, 2024Updated last year
- ☆45Apr 15, 2026Updated 3 months ago
- A software tool for personalized and allele-specific CRISPR editing.☆18Feb 1, 2022Updated 4 years ago
- Mutation-centric "Interaction Language Model" for Edgetic PPI prediction☆16May 28, 2026Updated 2 months ago
- CWL tools and workflows for GGR☆22Oct 12, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆67May 17, 2026Updated 2 months ago
- Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!☆31Jul 28, 2022Updated 4 years ago
- ☆18Jun 2, 2022Updated 4 years ago
- Factorize-Recover for Perturb-seq analysis (FR-Perturb)☆26Nov 4, 2025Updated 9 months ago
- On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs☆29Apr 2, 2026Updated 4 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆60Jul 18, 2026Updated 3 weeks ago
- ☆12Jan 31, 2023Updated 3 years ago