joed3 / eigenMTLinks
An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants
☆11Updated 5 years ago
Alternatives and similar repositories for eigenMT
Users that are interested in eigenMT are comparing it to the libraries listed below
Sorting:
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- R package wrapping bedtools☆41Updated 3 months ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated 3 months ago
- A tidy interface for coverage analysis☆30Updated 5 years ago
- An R package to interpret biological trends from DNA methylation data☆17Updated 3 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Flexible Bayesian inference of mutational signatures☆35Updated 2 years ago
- An R for fast and flexible DNA methylation analysis☆31Updated last week
- Filter and prioritize fusion calls☆20Updated 9 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.☆22Updated 7 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- HOT regions paper☆11Updated 6 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- DriverPower☆26Updated 5 months ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Updated 2 years ago
- Single-cell Bisulfite Sequencing Data Mapping☆12Updated 4 years ago
- ☆29Updated 11 months ago
- ☆17Updated 11 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last month
- Pan-transcriptomic phenotyping☆18Updated this week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- iread☆25Updated 4 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year