joed3 / eigenMTLinks
An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants
☆11Updated 6 years ago
Alternatives and similar repositories for eigenMT
Users that are interested in eigenMT are comparing it to the libraries listed below
Sorting:
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Flexible Bayesian inference of mutational signatures☆38Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- An R package to interpret biological trends from DNA methylation data☆18Updated 3 years ago
- R package wrapping bedtools☆44Updated 9 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 9 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated 2 weeks ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 7 years ago
- A tidy interface for coverage analysis☆31Updated 5 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- Differential expression and allelic analysis, nonparametric statistics☆30Updated 11 months ago
- Read HOMER motif analysis output in R.☆17Updated 7 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- ☆33Updated 3 years ago
- An R for fast and flexible DNA methylation analysis☆35Updated last week
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- ☆19Updated 6 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- ☆34Updated last month
- Pan-transcriptomic phenotyping☆19Updated last month
- Transcript quantification import with automatic metadata detection☆67Updated this week
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- DriverPower☆26Updated 11 months ago
- ☆39Updated 4 years ago
- HOT regions paper☆11Updated 6 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆35Updated last month