Alternatives and similar repositories for eigenMT

Users that are interested in eigenMT are comparing it to the libraries listed below

• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆38Updated 2 years ago
• corbinq / apex
  Toolkit for QTL mapping and meta-analysis.
  ☆17Updated 3 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated 10 months ago
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆28Updated 4 years ago
• jmw86069 / splicejam
  Sashimi plots for RNA-seq data using detected transcripts
  ☆28Updated 3 months ago
• sa-lee / superintronic
  A tidy interface for coverage analysis
  ☆29Updated 5 years ago
• oncogenetics / LocusExplorer
  An interactive graphical illustration of genetic associations and their biological context
  ☆16Updated last year
• markrobinsonuzh / diff_splice_paper
  Code for differential splicing comparison paper (Soneson, Matthes, et al.)
  ☆20Updated 9 years ago
• jtleek / sva-devel
  ☆29Updated 11 months ago
• PejLab / Pantry
  Pan-transcriptomic phenotyping
  ☆18Updated this week
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated this week
• COMBINE-lab / minnow
  ☆12Updated 3 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• statgen / fivex
  Interactive eQTL visualizations
  ☆13Updated 2 years ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆18Updated 3 years ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆31Updated 2 years ago
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 7 years ago
• mskilab-org / gTrack
  R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework
  ☆16Updated 5 months ago
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• sigven / cacao
  Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
  ☆21Updated 4 years ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated last year
• gkichaev / PAINTOR_V2.1
  ☆22Updated 8 years ago
• plantformatics / Socrates
  ☆21Updated 3 months ago
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆40Updated last year
• smshuai / DriverPower
  DriverPower
  ☆26Updated 5 months ago
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated 8 months ago
• rr1859 / R.4Cker
  ☆17Updated 5 years ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆35Updated 2 years ago
• Danko-Lab / rtfbs_db
  Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
  ☆23Updated 6 years ago
• pachterlab / aggregationDE
  Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter
  ☆19Updated 7 years ago