Alternatives and similar repositories for locusplotr:

Users that are interested in locusplotr are comparing it to the libraries listed below

• yuanzhongshang / GIFT
  ☆18Updated 3 months ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆21Updated 6 years ago
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆15Updated 4 months ago
• opain / eQTL_to_TWAS
  Methods for converting eQTL summary statistics into TWAS SNP-weights
  ☆13Updated 10 months ago
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆16Updated 11 months ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated last year
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆18Updated 2 years ago
• RitchieLab / Gene-level-statistical-colocalization
  ☆15Updated 3 years ago
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated last year
• jinghuazhao / EWAS-fusion
  Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
  ☆12Updated last year
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆15Updated 3 years ago
• scbaca / cwas
  Workflow for performing cistrome-wide associations studies
  ☆10Updated 2 years ago
• ylaboratory / seismic
  Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
  ☆14Updated 3 months ago
• hakyimlab / brainxcan
  ☆8Updated last month
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆21Updated 4 months ago
• opain / Calculating-FUSION-TWAS-weights-pipeline
  This is a pipeline for calculating weights for TWAS
  ☆30Updated 2 years ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆27Updated 4 months ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆15Updated 3 years ago
• szcf-weiya / MTWAS
  R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"
  ☆14Updated 7 months ago
• bhattacharya-a-bt / isotwas
  ☆21Updated last month
• LizaDarrous / PheWAS-cluster
  ☆19Updated 6 months ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated 11 months ago
• hailianghuang / FM-summary
  Fine-mapping method only using summary statistics
  ☆18Updated 8 years ago
• EMO-Consortium / GeneticCorrelation
  ☆11Updated last year
• jinghuazhao / INF
  SCALLOP-INF analysis
  ☆20Updated 5 months ago
• FinucaneLab / fine-mapping-inf
  Fine-mapping with infinitesimal effects
  ☆14Updated 11 months ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆21Updated this week
• marcoralab / MRcovid
  ☆11Updated 2 years ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆28Updated 2 years ago