wuyangf7 / OPERALinks
This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of molecular phenotypes (e.g., expression level of a gene and DNA methylation level at CpG sites) with a complex trait of interest using summary-level data from GWAS and molecular QTL studies. OPERA is a Bayesian gene…
☆36Updated last year
Alternatives and similar repositories for OPERA
Users that are interested in OPERA are comparing it to the libraries listed below
Sorting:
- ☆23Updated 3 months ago
- FLAMES: Accurate gene prioritization in GWAS loci☆54Updated 8 months ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆30Updated last week
- Cross-population fine-mapping☆39Updated 11 months ago
- Colocalization analysis of genetic association signals☆53Updated 5 months ago
- Create Regional Association Plots☆12Updated 2 months ago
- This is a pipeline for calculating weights for TWAS☆32Updated 3 years ago
- ☆12Updated last year
- harmonization, liftover, and imputation of summary statistics from GWAS☆34Updated 5 years ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆41Updated 2 years ago
- ☆13Updated 3 years ago
- Tissue-Gene Fine-Mapping☆26Updated 8 months ago
- An R package for creating ggplot2 based miami plots.☆18Updated 8 months ago
- R script to make Manhattan-style plot for TWAS☆41Updated 4 years ago
- ☆23Updated 3 years ago
- Manhattan++☆28Updated last year
- ☆21Updated 3 months ago
- Software for estimating correlation of trait effect sizes across populations☆50Updated 5 months ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 7 years ago
- xQTLbiolinks: an R package for integrative analysis with xQTL data☆17Updated last year
- Code supporting analyses in paper on fine-mapping AD loci☆16Updated 4 years ago
- ☆24Updated 4 years ago
- TWAS-pipeline☆24Updated 4 years ago
- ☆37Updated 4 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated 2 years ago
- Regional association plots☆25Updated last year
- GENI plots to visualise results from genome-wide association studies☆30Updated last year
- Make LocusZoom-like plots with your own LD matrix.☆47Updated 3 years ago
- A powerful TWAS framework leveraging summary-level reference data☆31Updated 7 months ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Updated 3 years ago