A program for the Maximum-likelihood analysis of population genomic data.
☆30Apr 1, 2021Updated 5 years ago
Alternatives and similar repositories for MAPGD
Users that are interested in MAPGD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Nov 13, 2019Updated 6 years ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆15Aug 11, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆19Nov 29, 2022Updated 3 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Mar 19, 2026Updated 3 weeks ago
- initial commit☆26Dec 29, 2022Updated 3 years ago
- Multivariate vIsualisatioN and OuTlier Analysis Using R☆14Apr 8, 2023Updated 3 years ago
- ☆15Mar 20, 2023Updated 3 years ago
- Analyze and simulate Pool-Seq time series data☆17Jun 16, 2022Updated 3 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Sep 17, 2020Updated 5 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Nov 29, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Population genetic summary statistics☆40Sep 28, 2023Updated 2 years ago
- GLASS consortium☆14May 31, 2022Updated 3 years ago
- Tools to convert to and from vcf format☆14Jun 21, 2017Updated 8 years ago
- The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps☆14Feb 2, 2021Updated 5 years ago
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 10 years ago
- Scripts to run several protocols to process and analyze Next-Generation Sequencing data☆18Aug 3, 2023Updated 2 years ago
- ☆32Jan 5, 2023Updated 3 years ago
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- ☆17Mar 2, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- GONE: Scripts, programs and an example data set☆53Jul 20, 2025Updated 8 months ago
- Estimate recombination rates from population genetic data☆71Jun 10, 2020Updated 5 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆292Feb 25, 2026Updated last month
- This repository contains the code and manual for the R package delimitR.☆17Apr 19, 2022Updated 3 years ago
- Sweep Inference Framework (controlling for correlation)☆28Jul 10, 2024Updated last year
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Jul 30, 2020Updated 5 years ago
- Parallel implementation of the LAST aligner☆18Nov 27, 2016Updated 9 years ago
- Methods for examining PCA locally along the genome.☆88Aug 13, 2024Updated last year
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Nov 4, 2019Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Fit phenomenological sigmoid and impulse curves with priors to improve interpretability☆10May 29, 2024Updated last year
- ☆30Oct 14, 2022Updated 3 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆95Sep 8, 2016Updated 9 years ago
- ☆34Jan 14, 2026Updated 2 months ago
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Nov 20, 2020Updated 5 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆89Jun 14, 2021Updated 4 years ago
- This repository is deprecated, please use the link to the right.☆23Dec 11, 2018Updated 7 years ago