LynchLab / MAPGDLinks
A program for the Maximum-likelihood analysis of population genomic data.
☆28Updated 4 years ago
Alternatives and similar repositories for MAPGD
Users that are interested in MAPGD are comparing it to the libraries listed below
Sorting:
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- ☆17Updated 9 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆19Updated 7 years ago
- A package for population structure inference from RAD-seq data☆31Updated 4 years ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 4 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆59Updated 7 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated last month
- Population genetics analyses from NGS data☆25Updated 4 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- ☆43Updated 3 months ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- microhaplotype visualizer and analyzer☆19Updated 4 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- ☆26Updated 4 months ago
- ☆22Updated 6 years ago
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 9 months ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 7 years ago
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Updated 3 years ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- Tutorial on using popular tools for learning about population history☆51Updated 6 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- ☆24Updated 8 years ago
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆14Updated last year
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- ☆30Updated 3 weeks ago