Alternatives and similar repositories for MAPGD

Users that are interested in MAPGD are comparing it to the libraries listed below

• yangjl / pseudoRef
  Make Pseudo-Reference Genome from VCF/BCF
  ☆14Updated 4 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆33Updated 4 years ago
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆60Updated 7 years ago
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 6 years ago
• blaxterlab / blobology
  Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …
  ☆46Updated 3 years ago
• gbradburd / SpaceMix
  ☆30Updated 2 years ago
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 9 years ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• ANGSD / NgsRelate
  ☆43Updated 4 months ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆83Updated 11 months ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆52Updated last month
• auton1 / LDhat
  Estimate recombination rates from population genetic data
  ☆67Updated 5 years ago
• LohmuellerLab / fitdadi
  Tools for inference of the DFE with dadi
  ☆14Updated 4 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆48Updated this week
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆19Updated 7 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆33Updated 5 years ago
• jjberg2 / PolygenicAdaptationCode
  ☆20Updated 4 years ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆47Updated 2 weeks ago
• z0on / GO_MWU
  Rank-based Gene Ontology analysis of gene expression data
  ☆42Updated 2 years ago
• johnssproul / RepeatProfiler
  ☆26Updated 5 months ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆26Updated 5 years ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆26Updated last year
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 7 years ago
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆27Updated 6 years ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆56Updated last year
• evolgenomics / haplotagging
  Code and binaries related to processing haplotagging data
  ☆15Updated 3 years ago
• ngthomas / microhaplot
  microhaplotype visualizer and analyzer
  ☆19Updated 4 years ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆45Updated last year
• mossmatters / Angiosperms353
  HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm
  ☆19Updated 2 years ago