Alternatives and similar repositories for MAPGD:

Users that are interested in MAPGD are comparing it to the libraries listed below

• ngthomas / microhaplot
  microhaplotype visualizer and analyzer
  ☆18Updated 3 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 3 years ago
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆56Updated 6 years ago
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 6 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆41Updated 5 years ago
• LohmuellerLab / fitdadi
  Tools for inference of the DFE with dadi
  ☆14Updated 3 years ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆44Updated 5 months ago
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 9 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆19Updated 7 years ago
• z0on / GO_MWU
  Rank-based Gene Ontology analysis of gene expression data
  ☆40Updated 2 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆49Updated last month
• ANGSD / NgsRelate
  ☆43Updated last year
• owensgl / reformat
  Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format
  ☆13Updated 2 weeks ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated 3 weeks ago
• champost / ABLE
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Updated 6 years ago
• ibest / ARC
  Assembly by Reduced Complexity (ARC)
  ☆41Updated 8 years ago
• mfumagalli / Copenhagen
  Analysis of genotyping and next-generation sequencing data in medical and population genetics
  ☆23Updated 2 years ago
• yangjl / pseudoRef
  Make Pseudo-Reference Genome from VCF/BCF
  ☆14Updated 4 years ago
• blaxterlab / blobology
  Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …
  ☆46Updated 2 years ago
• Yale-EEB723 / syllabus
  ☆22Updated 5 years ago
• mscampbell / Genome_annotation
  These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…
  ☆15Updated 7 years ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 5 months ago
• JosephCrispell / homoplasyFinder
  A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
  ☆20Updated 3 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆49Updated 6 years ago
• evolgenomics / haplotagging
  Code and binaries related to processing haplotagging data
  ☆14Updated 2 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated 11 months ago