stephenslab / effective-computingLinks
Effective Computing—Resources for Computational Biologists
☆26Updated 5 years ago
Alternatives and similar repositories for effective-computing
Users that are interested in effective-computing are comparing it to the libraries listed below
Sorting:
- R package to estimate kinship and FST from SNP data☆21Updated 8 months ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆12Updated 4 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- ☆22Updated 8 years ago
- Bayesian hierarchical model for complex trait analysis☆44Updated last year
- TOP results by CONfident efFECT Sizes.☆14Updated 5 months ago
- ☆29Updated 10 months ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆30Updated last year
- Tutorial to reproduce the analysis of Peixoto et al. (2015)☆9Updated 9 years ago
- QTL analysis software for high-dimensional data and complex cross designs☆34Updated this week
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Statistical GENetics Input/Output Functions☆18Updated 3 months ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆38Updated 5 months ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 8 months ago
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆10Updated 5 years ago
- tools to efficiently retrieve and calculate LD☆33Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- Generalized linear Mixed Model Association Tests☆42Updated last year
- ☆30Updated 3 years ago
- Genomic plot in trellis layout☆40Updated last year
- Get SNP proxies from the 1000 Genomes Project.☆28Updated 6 years ago
- Experimental EIGENSOFT performance improvements.☆22Updated 10 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- Glimma R package☆50Updated 9 months ago
- Flexible Bayesian inference of mutational signatures☆34Updated 2 years ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆44Updated 2 months ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆13Updated 2 months ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 4 years ago
- An R package to help in plotting PCA results nicely.☆13Updated 5 years ago