stephenslab / effective-computingLinks
Effective Computing—Resources for Computational Biologists
☆27Updated 5 years ago
Alternatives and similar repositories for effective-computing
Users that are interested in effective-computing are comparing it to the libraries listed below
Sorting:
- R package to estimate kinship and FST from SNP data☆21Updated 2 weeks ago
- Glimma R package☆50Updated last year
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 7 years ago
- A small R package to make sequencing read coverage plots in R.☆40Updated 2 weeks ago
- Genomic plot in trellis layout☆42Updated last year
- QTL analysis software for high-dimensional data and complex cross designs☆37Updated 7 months ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Bayesian hierarchical model for complex trait analysis☆46Updated last year
- TOP results by CONfident efFECT Sizes.☆15Updated last year
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Updated last month
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21Updated 7 months ago
- Representation and manipulation of genomic intervals☆46Updated last month
- ☆22Updated 9 years ago
- fastqcr: Quality Control of Sequencing Data☆76Updated 2 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated 3 months ago
- R interface to 'Gos'☆39Updated 2 years ago
- An R package to help in plotting PCA results nicely.☆12Updated 6 years ago
- Generalized linear Mixed Model Association Tests☆44Updated last month
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆35Updated 7 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last week
- ☆23Updated last week
- Explore design matrices interactively with R/Shiny☆38Updated 2 months ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆44Updated last year
- Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)☆46Updated 2 weeks ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 5 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Updated 5 months ago
- ☆28Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆30Updated 10 months ago