blab / baltic
baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longer receive updates, so any further development to baltic is going to happen at https://github.com/evogytis/baltic.
☆12Updated 5 years ago
Alternatives and similar repositories for baltic:
Users that are interested in baltic are comparing it to the libraries listed below
- Pipelines to do MinION sequencing of Zika virus☆15Updated 5 years ago
- ☆17Updated 8 months ago
- ☆17Updated 7 months ago
- Bacterial phylogenetics in BEAST 2.☆17Updated last year
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆12Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆32Updated last month
- HyPhy tutorials☆10Updated 6 years ago
- ☆19Updated 7 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆34Updated 2 weeks ago
- Systematic ProtEin AnnotatoR☆19Updated 3 months ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 8 years ago
- A list of weak Bacterial assemblies in GenBank☆18Updated 7 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 6 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Updated 3 years ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 5 years ago
- Intra-species bacterial contamination detection☆24Updated 2 months ago
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆14Updated last year
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10Updated 6 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆29Updated this week
- ASMNGS20 - 2020 Conference Details☆15Updated 2 years ago
- ☆27Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 6 months ago
- SARs-CoV-2 Primer schemes☆15Updated last year
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆34Updated last week
- Finding prophage regions in bacterial genomes using brute force☆22Updated 2 years ago
- ☆18Updated 2 months ago
- Fast viral consensus genome reconstruction☆22Updated last month