baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longer receive updates, so any further development to baltic is going to happen at https://github.com/evogytis/baltic.
☆12Dec 18, 2019Updated 6 years ago
Alternatives and similar repositories for baltic
Users that are interested in baltic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis of EBOV genome sequence from Guinea, Sierra Leone and Liberia from 2014-2016☆61Nov 14, 2018Updated 7 years ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 6 years ago
- Pipelines to do MinION sequencing of Zika virus☆15Jul 25, 2019Updated 6 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- RethinkDB database to support real-time virus analysis☆35Feb 19, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Reconstruction of transmission trees using genomic data☆72Sep 27, 2023Updated 2 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆33Oct 25, 2013Updated 12 years ago
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10Apr 15, 2026Updated 2 weeks ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆18Apr 28, 2023Updated 3 years ago
- Pathogen evolution, selection and immunity☆45Mar 5, 2024Updated 2 years ago
- ☆19Mar 20, 2026Updated last month
- The Dinucleotide Quantification Python Package☆11Mar 12, 2022Updated 4 years ago
- PhyDyn: Epidemiological modelling in BEAST☆21Dec 22, 2022Updated 3 years ago
- a short graduate population biology course☆13Feb 22, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Ultrafast Sample Placement on Existing Trees☆140Feb 6, 2026Updated 2 months ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆251Apr 24, 2026Updated last week
- HyPhy tutorials☆11Apr 9, 2018Updated 8 years ago
- ☆18Jun 11, 2024Updated last year
- Influenza forecasts visualizer☆43Dec 6, 2022Updated 3 years ago
- A Heroku service that lets you send anonymous messages to colleagues on Slack.☆20Jun 19, 2020Updated 5 years ago
- GPU-accelerated DNA barcode classification☆13Jan 2, 2025Updated last year
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- ☆12Feb 14, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Dec 20, 2022Updated 3 years ago
- Docker containers that demonstrate a proof of concept bwa alignment workflow☆14Jan 13, 2015Updated 11 years ago
- A collection of documented examples using TreeTime☆22Jul 30, 2019Updated 6 years ago
- Phylogenetics between and within hosts at once, all along the genome.☆51Oct 2, 2024Updated last year
- uncover old chinese textual parallels based on sound☆16Updated this week
- ☆17Aug 18, 2012Updated 13 years ago
- This repo contains projects related to Vision, NLP and Reinforcement Learning☆16Apr 30, 2022Updated 4 years ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆26Jul 13, 2018Updated 7 years ago
- A text analysis interface for the humanities☆27Jun 23, 2011Updated 14 years ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆117Updated this week
- Global phylogenies of SARS-CoV-2 sequences☆85Oct 24, 2023Updated 2 years ago
- R package for ecological niche analysis (subniche on CRAN). Refines OMI analysis for realized niche decomposition using marine and enviro…☆10Apr 1, 2026Updated last month
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- ☆16Jan 21, 2024Updated 2 years ago