baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longer receive updates, so any further development to baltic is going to happen at https://github.com/evogytis/baltic.
☆12Dec 18, 2019Updated 6 years ago
Alternatives and similar repositories for baltic
Users that are interested in baltic are comparing it to the libraries listed below
Sorting:
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 6 years ago
- Analysis of EBOV genome sequence from Guinea, Sierra Leone and Liberia from 2014-2016☆61Nov 14, 2018Updated 7 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- Reconstruction of transmission trees using genomic data☆72Sep 27, 2023Updated 2 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆17Apr 28, 2023Updated 2 years ago
- Pipelines to do MinION sequencing of Zika virus☆15Jul 25, 2019Updated 6 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆33Oct 25, 2013Updated 12 years ago
- RethinkDB database to support real-time virus analysis☆35Feb 19, 2026Updated last week
- PhyDyn: Epidemiological modelling in BEAST☆21Dec 22, 2022Updated 3 years ago
- ☆18Oct 3, 2025Updated 4 months ago
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10Feb 23, 2026Updated last week
- a short graduate population biology course☆13Feb 22, 2023Updated 3 years ago
- The Dinucleotide Quantification Python Package☆11Mar 12, 2022Updated 3 years ago
- HyPhy tutorials☆11Apr 9, 2018Updated 7 years ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- Pathogen evolution, selection and immunity☆45Mar 5, 2024Updated last year
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Disease outbreak reconstruction from epidemiological and genetic data☆35Dec 16, 2025Updated 2 months ago
- ☆14Jul 12, 2022Updated 3 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 3 years ago
- Ultrafast Sample Placement on Existing Trees☆139Feb 6, 2026Updated 3 weeks ago
- ☆13Oct 30, 2024Updated last year
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 2 months ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 2 years ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆116Feb 16, 2026Updated 2 weeks ago
- Phyla: Towards a Foundation Model for Phylogenetic Inference☆28Nov 20, 2025Updated 3 months ago
- ☆18Jun 11, 2024Updated last year
- Main development repository for SpreadGL☆20Sep 30, 2024Updated last year
- ☆16Jan 21, 2024Updated 2 years ago
- Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time…☆20Jan 23, 2025Updated last year
- A small program that glues together other programs allowing a user to input a codon alignment in FASTA format and produce an annotated ph…☆18Jan 14, 2015Updated 11 years ago
- BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.☆21Aug 11, 2025Updated 6 months ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆249Updated this week
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 2 years ago
- ☆19Nov 24, 2025Updated 3 months ago
- HyPhy standalone analyses☆53Jan 5, 2026Updated last month
- Influenza forecasts visualizer☆43Dec 6, 2022Updated 3 years ago
- Phylogenetics between and within hosts at once, all along the genome.☆50Oct 2, 2024Updated last year
- Global phylogenies of SARS-CoV-2 sequences☆85Oct 24, 2023Updated 2 years ago