blab / balticLinks
baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longer receive updates, so any further development to baltic is going to happen at https://github.com/evogytis/baltic.
☆12Updated 6 years ago
Alternatives and similar repositories for baltic
Users that are interested in baltic are comparing it to the libraries listed below
Sorting:
- Main development repository for SpreadGL☆20Updated last year
- Bacterial phylogenetics in BEAST 2.☆18Updated 2 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated 2 weeks ago
- Pipelines to do MinION sequencing of Zika virus☆15Updated 6 years ago
- ☆18Updated 3 months ago
- ☆18Updated last year
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated last year
- ☆18Updated 8 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- blast, shmlast☆21Updated 5 years ago
- Phylogenetics between and within hosts at once, all along the genome.☆50Updated last year
- ☆16Updated 2 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- Locus and lineage tests for bacterial GWAS☆28Updated 8 years ago
- HyPhy tutorials☆11Updated 7 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Updated 3 years ago
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- A list of weak Bacterial assemblies in GenBank☆18Updated 8 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 7 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Updated 7 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 7 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Identifying ViRal and Circular content in metAgenomes☆14Updated 7 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Updated 3 years ago