blab / baltic
baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longer receive updates, so any further development to baltic is going to happen at https://github.com/evogytis/baltic.
☆12Updated 5 years ago
Alternatives and similar repositories for baltic:
Users that are interested in baltic are comparing it to the libraries listed below
- Pipelines to do MinION sequencing of Zika virus☆15Updated 5 years ago
- Bacterial phylogenetics in BEAST 2.☆17Updated last year
- ☆17Updated this week
- Scalable relaxed clock phylogenetic dating☆24Updated 11 months ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 5 years ago
- ☆17Updated 8 months ago
- HyPhy tutorials☆10Updated 6 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆37Updated 2 months ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆34Updated this week
- A list of weak Bacterial assemblies in GenBank☆18Updated 7 years ago
- ☆19Updated 8 months ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 6 years ago
- Main development repository for SpreadGL☆17Updated 5 months ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆35Updated 2 weeks ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 6 years ago
- Reconstruction of transmission trees using genomic data☆61Updated last year
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆30Updated last month
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Updated 2 years ago
- R We There Yet?☆30Updated 2 years ago
- SARs-CoV-2 Primer schemes☆15Updated last year
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 2 years ago
- ☆12Updated 5 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Updated last year
- Phylogenetics between and within hosts at once, all along the genome.☆48Updated 5 months ago
- NCBI Pathogen Detection Portal toolkit☆11Updated last year