FowlerLab / Envision2017Links
We present Envision, an accurate predictor of protein variant molecular effect, trained using large-scale experimental mutagenesis data. All data and software in this study are freely available. The training data set and all code used to train the models and generate the figures presented in this manuscript are available here. Envision predictio…
☆19Updated 8 years ago
Alternatives and similar repositories for Envision2017
Users that are interested in Envision2017 are comparing it to the libraries listed below
Sorting:
- Mutation effects predicted from sequence co-variation☆72Updated 8 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Python package and command line tool for epitope prediction☆52Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆19Updated 6 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆57Updated 6 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Updated 3 weeks ago
- HLA-I ligand predictor☆43Updated 4 months ago
- Feature map and function annotation of Proteins☆34Updated last year
- ☆60Updated 8 years ago
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆18Updated 3 years ago
- ☆86Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆67Updated 3 years ago
- Evolutionary conservation estimation of residues or nucleotides☆57Updated 3 years ago
- DeepECtransformer☆29Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Conservation analysis of homologous proteins with Python☆13Updated 4 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 3 years ago
- Evolutionary velocity with protein language models☆95Updated last month
- software for the analysis and visualization of deep mutational scanning data☆34Updated 3 years ago
- A method to predict DNA shape features considering farther flanking region.☆38Updated last year
- an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression☆12Updated last year
- Fully convolutional deep learning variant effect predictor architecture☆23Updated 2 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆80Updated this week
- Automatic oligonucleotide design for PCR-based gene synthesis☆51Updated 2 months ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Updated 9 months ago
- HLA-II ligand predictor.☆46Updated 2 years ago
- Transmembrane proteins predicted through Language Model embeddings☆44Updated 6 months ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆17Updated 2 years ago