Alternatives and similar repositories for Envision2017

Users that are interested in Envision2017 are comparing it to the libraries listed below

• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆69Updated 8 years ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆51Updated 6 years ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆34Updated 2 years ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆66Updated 3 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated last year
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆49Updated last year
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆28Updated last year
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• ntranoslab / esm-variants
  ☆78Updated last year
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆12Updated 4 years ago
• matsengrp / vampire
  🧛 Deep generative models for TCR sequences 🧛
  ☆17Updated 3 years ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 6 years ago
• allydunham / sequence_unet
  Fully convolutional deep learning variant effect predictor architecture
  ☆23Updated last year
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆94Updated 7 months ago
• smolkelab / promoter_design
  Promoter activity measurement and modeling; artificial promoter design and testing
  ☆13Updated 2 years ago
• harmslab / gpmap
  A Python API for managing genotype-phenotype map data
  ☆12Updated 2 years ago
• SBRG / Protein_ML
  Machine learning workflows for analyzing high-throughput protein data
  ☆26Updated 8 years ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆72Updated 2 years ago
• IdoSpringer / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆18Updated 3 years ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆30Updated last year
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆47Updated 6 years ago
• ShenLab / gMVP
  ☆21Updated 2 years ago
• Merck / bgc-pipeline
  ☆11Updated 9 months ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated 8 months ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆42Updated last month
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆73Updated last month
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆26Updated 3 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆35Updated 4 months ago