Alternatives and similar repositories for SELAM

Users that are interested in SELAM are comparing it to the libraries listed below

• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 6 years ago
• champost / ABLE
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Updated 6 years ago
• LohmuellerLab / fitdadi
  Tools for inference of the DFE with dadi
  ☆14Updated 4 years ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 4 years ago
• russcd / Ancestry_HMM
  ☆29Updated 2 years ago
• ThomasTaus / poolSeq
  Analyze and simulate Pool-Seq time series data
  ☆15Updated 2 years ago
• owensgl / reformat
  Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format
  ☆13Updated 2 months ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 4 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆51Updated 2 weeks ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated 2 months ago
• avaughn271 / AdmixtureBayes
  ☆20Updated 7 months ago
• tsackton / linked-selection
  ☆24Updated 7 years ago
• shahab-sarmashghi / Skmer
  Fast and accurate tool for estimating genomic distances between genome-skims
  ☆43Updated last year
• pimbongaerts / radseq
  Collection of Python scripts for parsing/analyses of RAD-seq data
  ☆22Updated 2 months ago
• CshlSiepelLab / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆13Updated 2 years ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆19Updated 7 years ago
• regevs / gamma_smc
  ☆19Updated last year
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year
• samebdon / heRho
  heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412
  ☆10Updated last year
• lutteropp / QuartetScores
  Code for computing various support scores for internodes
  ☆19Updated 5 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 6 years ago
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated last month
• lntran26 / donni
  machine learning applications for dadi
  ☆15Updated 3 months ago
• kr-colab / FILET
  Software for detecting introgression using supervised machine learning
  ☆20Updated 2 years ago
• popgenmethods / SINGER
  Sampling and inference of genealogies with recombination
  ☆29Updated 7 months ago
• grenaud / ROHan
  Joint inference of heterozygosity rates and runs of homozygosity
  ☆14Updated 8 months ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 9 years ago