russcd / SELAM

Related projects: ⓘ

• LohmuellerLab / fitdadi
  Tools for inference of the DFE with dadi
  ☆14Updated 3 years ago
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 5 years ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆27Updated 5 years ago
• champost / ABLE
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Updated 6 years ago
• russcd / Ancestry_HMM
  ☆25Updated last year
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 5 years ago
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 8 years ago
• owensgl / reformat
  Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format
  ☆12Updated 4 months ago
• grenaud / ROHan
  Joint inference of heterozygosity rates and runs of homozygosity
  ☆11Updated 2 weeks ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 3 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆44Updated last year
• sriramlab / ArchIE
  A statistical framework for reference-free inference of archaic local ancestry
  ☆15Updated 4 years ago
• ThomasTaus / poolSeq
  Analyze and simulate Pool-Seq time series data
  ☆15Updated 2 years ago
• jjberg2 / PolygenicAdaptationCode
  ☆19Updated 4 years ago
• singhal / popgen_tutorial
  ☆11Updated 4 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆27Updated last year
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 3 years ago
• lstevison / vcf-conversion-tools
  Tools to convert to and from vcf format
  ☆14Updated 7 years ago
• dekoning-lab / grand-conv
  Rapid, interactive, probabilistic analysis of convergent molecular evolution
  ☆15Updated 6 years ago
• avaughn271 / AdmixtureBayes
  ☆17Updated 2 months ago
• CshlSiepelLab / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆13Updated last year
• tsackton / linked-selection
  ☆24Updated 7 years ago
• gwct / grampa
  Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis
  ☆11Updated last year
• jessiewu / bacterialGWAS
  A pipeline for performing genome-wide association tests for bacterial genomes.
  ☆28Updated 6 years ago
• CMPG / signet
  An R package to detect selection in biological pathways
  ☆14Updated 8 months ago
• JosephCrispell / homoplasyFinder
  A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
  ☆19Updated 3 years ago
• regevs / gamma_smc
  ☆17Updated 8 months ago
• pimbongaerts / radseq
  Collection of Python scripts for parsing/analyses of RAD-seq data
  ☆21Updated 3 years ago
• chilleo / ALPHA
  A toolkit for automated local phylogenomic analyses, or ALPHA
  ☆12Updated 4 years ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆49Updated 6 years ago