esctrionsit / snphubLinks
A Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.
☆19Updated last year
Alternatives and similar repositories for snphub
Users that are interested in snphub are comparing it to the libraries listed below
Sorting:
- A comprehensive collection of long inverted repeats in 424 eukaryotic genomes☆16Updated 4 years ago
- Efficient compression and retrieve of genotype data with integer sparse matrices☆16Updated 9 months ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆19Updated 3 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 8 months ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- Tao Yan's Plot Toolkit☆12Updated 6 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Integrative analysis of structural variations.☆40Updated 2 years ago
- ☆51Updated 6 years ago
- ☆11Updated 3 years ago
- R interface to the JBrowse 2 Linear Genome View.☆39Updated last year
- ☆17Updated 5 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 8 months ago
- ☆12Updated 6 years ago
- Plant small RNA target prediction tool☆26Updated 9 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆39Updated 2 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆65Updated last week
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 9 months ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Evolutionary Transcriptomics with R☆47Updated last week
- ☆46Updated 10 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 9 months ago
- ☆20Updated last year
- microRNA PREdiction From small RNA-seq data☆31Updated 8 years ago