esctrionsit / snphub
A Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.
☆19Updated 5 months ago
Alternatives and similar repositories for snphub:
Users that are interested in snphub are comparing it to the libraries listed below
- A command line tool to compute mapping statistics from a BAM file☆23Updated 3 years ago
- Evolutionary Transcriptomics with R☆42Updated 3 weeks ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆17Updated 2 years ago
- A comprehensive collection of long inverted repeats in 424 eukaryotic genomes☆16Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Efficient compression and retrieve of genotype data with integer sparse matrices☆16Updated last year
- R interface to the JBrowse 2 Linear Genome View.☆36Updated last year
- ☆11Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 3 months ago
- Perform GWAS with gemma in a simple pipeline☆25Updated 2 years ago
- Adapters for trimming☆30Updated 6 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- ☆10Updated 10 years ago
- Tao Yan's Plot Toolkit☆11Updated 5 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- ☆28Updated 2 years ago
- ☆11Updated 6 years ago
- An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions☆12Updated 3 weeks ago
- Plant small RNA target prediction tool☆26Updated 8 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- JBrowse plugin that supports smallRNA alignments☆12Updated 5 years ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆35Updated 6 years ago
- ☆23Updated 5 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 years ago
- MapOptics is a lightweight cross-platform tool that enables the user to visualise and interact with the alignment of Bionano optical mapp…☆17Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆31Updated 5 years ago
- R-package: Calculation of haplotype blocks and libraries☆30Updated last month
- Transposable element polymorphism identification☆33Updated 4 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 years ago
- Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format☆21Updated 14 years ago