NBISweden / GenErodeLinks
GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.
☆27Updated last month
Alternatives and similar repositories for GenErode
Users that are interested in GenErode are comparing it to the libraries listed below
Sorting:
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Multi-genome synteny block visualization tool☆47Updated 8 months ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆20Updated 4 months ago
- Infer demographic history with the Moran model☆48Updated 3 months ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 7 months ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- Genome alignment and synteny plots☆32Updated 2 years ago
- ☆33Updated 4 years ago
- read and analyse RepeatMasker output☆25Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated last month
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- ☆33Updated last year
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated last month
- Yet another Hi-C scaffolding tool☆22Updated 11 months ago
- ☆25Updated 3 weeks ago
- A genome assembly assessment pipeline.☆37Updated last year
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆34Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Genome Annotation Pipeline☆36Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated 3 weeks ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated last year
- ☆26Updated 7 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- ☆29Updated last year
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 6 months ago
- predicting DFE and alpha from polymorphism data☆27Updated 7 years ago