GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.
☆31Mar 11, 2026Updated 3 weeks ago
Alternatives and similar repositories for GenErode
Users that are interested in GenErode are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- GONE: Scripts, programs and an example data set☆53Jul 20, 2025Updated 8 months ago
- ☆21Jan 11, 2024Updated 2 years ago
- R Port of psmc☆17Mar 16, 2023Updated 3 years ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆14May 29, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- This repositiory serves as an auxiliary material to an awk course/seminar page.☆30Sep 1, 2025Updated 7 months ago
- ☆37Nov 30, 2023Updated 2 years ago
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- ☆10May 14, 2025Updated 10 months ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Mar 27, 2026Updated last week
- A pipeline for Bacterial Whole genome sequence data analysis☆16Jul 24, 2022Updated 3 years ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆13Apr 2, 2026Updated last week
- GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.☆25Sep 19, 2016Updated 9 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Automated pipeline for running CoalHMM☆13Jan 9, 2026Updated 3 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Jan 28, 2026Updated 2 months ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated last year
- genome annotation (RNAseq and TE) pipeline (draft)☆13Aug 26, 2025Updated 7 months ago
- Sorting Intolerant From Tolerant For Genomes☆32Nov 3, 2017Updated 8 years ago
- Fast analysis and visualization of latent clusters in population genetic data☆78Mar 29, 2022Updated 4 years ago
- MSMC2 Scripts☆28Sep 24, 2025Updated 6 months ago
- ☆14Oct 27, 2025Updated 5 months ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated last month
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- NBIS/Elixir course: Tools for Reproducible Research☆69Updated this week
- detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity☆12May 25, 2023Updated 2 years ago
- Haplotype and population structure inference using neural networks.☆29Dec 5, 2024Updated last year
- ☆17Oct 21, 2024Updated last year
- Ancient microbiome snakemake workflow☆27Apr 2, 2026Updated last week
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 2 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- An ultra-fast gzip file tools☆27Apr 25, 2024Updated last year
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Nov 20, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆27Mar 20, 2026Updated 3 weeks ago
- ☆28Mar 30, 2026Updated last week
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated last month
- Generating UTRs from SHort Reads☆11Sep 28, 2020Updated 5 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Apr 4, 2023Updated 3 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆44Jul 27, 2023Updated 2 years ago