NBISweden / GenErodeLinks
GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.
☆27Updated 2 months ago
Alternatives and similar repositories for GenErode
Users that are interested in GenErode are comparing it to the libraries listed below
Sorting:
- Multi-genome synteny block visualization tool☆47Updated 3 weeks ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- ☆33Updated 4 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 8 months ago
- ☆33Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- ☆28Updated last week
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆22Updated last year
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Yet another Hi-C scaffolding tool☆22Updated last year
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆22Updated 2 weeks ago
- R package to draw syntenic plots in 3 different styles☆42Updated 2 months ago
- Infer demographic history with the Moran model☆49Updated 4 months ago
- Genome Annotation Pipeline☆39Updated last year
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- Genome alignment and synteny plots☆32Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- The repository serves as a public and official hosting of the pSONIC program (Conover et al., 2021).☆21Updated 4 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆54Updated 4 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated last month
- ☆29Updated last year
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated 11 months ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- ☆53Updated 4 months ago