NBISweden / GenErode
GitHub repository for GenErode, a Snakemake pipeline for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.
☆25Updated 2 weeks ago
Alternatives and similar repositories for GenErode:
Users that are interested in GenErode are comparing it to the libraries listed below
- Likelihood-based Selective Sweep Detection☆37Updated last year
- ☆32Updated 4 years ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆48Updated 3 weeks ago
- ☆24Updated 7 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆30Updated last week
- ☆22Updated 10 months ago
- Sex assignment through coverage☆17Updated 11 months ago
- read and analyse RepeatMasker output☆24Updated last year
- Tools and Utilities for msmc and msmc2☆47Updated last year
- ☆24Updated this week
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆19Updated 5 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 5 months ago
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- Genome Annotation Pipeline☆35Updated 6 months ago
- General purpose population genetics software☆12Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- Computational Analysis of Gene Expression Evolution☆36Updated this week
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆52Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 5 months ago
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 7 months ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- ☆9Updated 9 years ago