GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.
☆32Oct 21, 2026Updated last week
Alternatives and similar repositories for GenErode
Users that are interested in GenErode are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Short lessons, training various Research Software Engineering tools useful to our work.☆14Updated this week
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆15May 29, 2024Updated 2 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 9 months ago
- Bayesian analysis of hybrids☆12Feb 19, 2019Updated 7 years ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- genome annotation (RNAseq and TE) pipeline (draft)☆14Sep 17, 2026Updated last month
- GONE: Scripts, programs and an example data set☆57May 12, 2026Updated 5 months ago
- ☆22Jan 11, 2024Updated 2 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- R Port of psmc☆16Mar 16, 2023Updated 3 years ago
- ☆11May 14, 2025Updated last year
- Phylogenomic species tree inference under gene duplication and loss☆13Sep 20, 2026Updated last month
- nf-core/taxprofiler post-processing; verification of classification results; consensus maps☆11Oct 22, 2026Updated last week
- Ancient microbiome snakemake workflow☆34Jun 12, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ttt☆10Apr 12, 2026Updated 6 months ago
- ☆37Nov 30, 2023Updated 2 years ago
- A machine learning approach to alignment filtering☆17Jun 18, 2026Updated 4 months ago
- ☆16Jan 6, 2022Updated 4 years ago
- Automated pipeline for running CoalHMM☆13Jan 9, 2026Updated 9 months ago
- ☆12Jun 12, 2023Updated 3 years ago
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- Recombination Landscape Estimation using Recurrent Neural Networks☆74Mar 27, 2026Updated 7 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆49Mar 7, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.☆25Sep 19, 2016Updated 10 years ago
- ☆14Apr 14, 2026Updated 6 months ago
- A pipeline for Bacterial Whole genome sequence data analysis☆15Jul 24, 2022Updated 4 years ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated 2 years ago
- ContScout sequence contamination filter tool☆26Dec 28, 2025Updated 10 months ago
- MSMC2 Scripts☆28May 29, 2026Updated 5 months ago
- Population genetics analyses☆23Oct 10, 2019Updated 7 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆47Jan 28, 2026Updated 9 months ago
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated 7 months ago
- Haplotype and population structure inference using neural networks.☆30Dec 5, 2024Updated last year
- Visualize microbial evolution at the SNP level!☆18Aug 12, 2025Updated last year
- NBIS/Elixir course: Tools for Reproducible Research☆71Updated this week
- Fast analysis and visualization of latent clusters in population genetic data☆77Mar 29, 2022Updated 4 years ago
- Sorting Intolerant From Tolerant For Genomes☆33Nov 3, 2017Updated 8 years ago
- An ultra-fast gzip file tools☆29Jun 23, 2026Updated 4 months ago