NBISweden / GenErodeLinks
GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.
☆27Updated this week
Alternatives and similar repositories for GenErode
Users that are interested in GenErode are comparing it to the libraries listed below
Sorting:
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆35Updated 4 months ago
- Likelihood-based Selective Sweep Detection☆38Updated last year
- Software for detecting introgression using supervised machine learning☆21Updated 2 years ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated last month
- Software for ancestry estimation in unrelated individuals☆20Updated 3 weeks ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆20Updated 9 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆32Updated 4 years ago
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆14Updated 3 weeks ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 9 months ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 9 months ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- ☆26Updated 4 months ago
- ☆24Updated last year
- Computational Analysis of Gene Expression Evolution☆42Updated 2 weeks ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆33Updated 9 months ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated last year
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Toolkit for evolutionary analyses of linkage groups☆31Updated 11 months ago
- Genome Annotation Pipeline☆36Updated 10 months ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.☆21Updated 8 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Scripts to convert between file formats for various analyses☆16Updated last month