NBISweden / GenErode
GitHub repository for GenErode, a Snakemake pipeline for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.
☆25Updated 3 weeks ago
Alternatives and similar repositories for GenErode:
Users that are interested in GenErode are comparing it to the libraries listed below
- Likelihood-based Selective Sweep Detection☆37Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated last month
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 9 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆49Updated 2 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- ☆32Updated 4 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 6 months ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Scripts to convert between file formats for various analyses☆15Updated last month
- Software for detecting introgression using supervised machine learning☆19Updated 2 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated last month
- Population genetics analyses from NGS data☆25Updated 4 years ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆20Updated 6 months ago
- ☆24Updated last month
- read and analyse RepeatMasker output☆24Updated last year
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆14Updated 2 months ago
- Multi-genome synteny block visualization tool☆32Updated 2 months ago
- GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.☆20Updated 8 years ago
- ☆24Updated 7 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Graph-aware Retrieval of Selective Sweeps☆21Updated 6 months ago
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated 2 months ago
- Computational Analysis of Gene Expression Evolution☆40Updated 2 weeks ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆30Updated this week
- Toolkit for evolutionary analyses of linkage groups☆28Updated 8 months ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆9Updated 2 years ago
- Deleterious mutation prediction pipeline☆13Updated 3 months ago