NBISweden / GenErodeLinks
GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.
☆27Updated 2 months ago
Alternatives and similar repositories for GenErode
Users that are interested in GenErode are comparing it to the libraries listed below
Sorting:
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Multi-genome synteny block visualization tool☆47Updated 8 months ago
- Infer demographic history with the Moran model☆48Updated 4 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 8 months ago
- R package to draw syntenic plots in 3 different styles☆42Updated last month
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆33Updated 4 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆21Updated 4 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Updated last year
- Genome Annotation Pipeline☆38Updated last year
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- The repository serves as a public and official hosting of the pSONIC program (Conover et al., 2021).☆21Updated 4 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- ☆33Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- Software for detecting introgression using supervised machine learning☆21Updated 2 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆34Updated 2 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Sampling and inference of genealogies with recombination☆43Updated 3 months ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 7 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆37Updated last year
- ☆52Updated 4 months ago
- HyPhy standalone analyses☆47Updated last month
- Genome alignment and synteny plots☆32Updated 2 years ago