Alternatives and similar repositories for msmc2_scripts

Users that are interested in msmc2_scripts are comparing it to the libraries listed below

• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆45Updated 3 years ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆35Updated last year
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆79Updated 6 months ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆53Updated 2 years ago
• speciationgenomics / presentations
  Presentations from the course
  ☆38Updated last year
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆28Updated 5 years ago
• millanek / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆48Updated 2 months ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆30Updated 2 months ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆42Updated 6 years ago
• clairemerot / angsd_pipeline
  ☆26Updated 2 years ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆47Updated 8 months ago
• ForBioPhylogenomics / tutorials
  Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
  ☆37Updated last year
• ShiuLab / PseudogenePipeline
  ☆40Updated 2 years ago
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆17Updated last month
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆48Updated last year
• jingwanglab / Populus-Genomic-Consequences-of-Hybridization
  ☆16Updated 3 years ago
• gphocs-dev / G-PhoCS
  G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …
  ☆34Updated 4 years ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 2 months ago
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆65Updated last year
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• rtfcoimbra / Coimbra-et-al-2021_CurrBiol
  Code used to analyse WGS data of giraffe in Coimbra et al. 2021
  ☆11Updated last year
• hsigeman / findZX
  ☆22Updated 3 years ago
• harvardinformatics / degenotate
  ☆50Updated last month
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆36Updated last year
• esayyari / DiscoVista
  ☆40Updated last year
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆63Updated 6 months ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆36Updated 5 months ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated last month
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆81Updated 4 years ago