MSMC2 Scripts
☆28Sep 24, 2025Updated 5 months ago
Alternatives and similar repositories for msmc2_scripts
Users that are interested in msmc2_scripts are comparing it to the libraries listed below
Sorting:
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated last month
- ☆67Dec 5, 2022Updated 3 years ago
- Tutorials on evolutionary genomics☆46Mar 11, 2022Updated 3 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆44Mar 7, 2024Updated last year
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated 10 months ago
- ☆16Jan 6, 2022Updated 4 years ago
- Implementation of the multiple sequential markovian coalescent☆91Aug 5, 2025Updated 6 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆185Dec 19, 2024Updated last year
- ☆21Jan 11, 2024Updated 2 years ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Nov 30, 2025Updated 3 months ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Snakemake module for the snpArcher pipeline for population size change inference.☆10Nov 12, 2024Updated last year
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated last year
- Heuristic search algorithm for fitting qpGraph models☆11Aug 4, 2022Updated 3 years ago
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Jan 11, 2021Updated 5 years ago
- GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples …☆31Updated this week
- Software for painlessly estimating average nucleotide diversity within and between populations☆155Oct 27, 2025Updated 4 months ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated last month
- ☆13Sep 11, 2025Updated 5 months ago
- ☆12Oct 13, 2023Updated 2 years ago
- Repository with documentation file of our Jan 22-24 workshop on Computational Population Genetics in Jena, Germany.☆15May 9, 2019Updated 6 years ago
- ☆24Jun 9, 2017Updated 8 years ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆328Jul 7, 2023Updated 2 years ago
- Support material for the "Comparative Genomics Laboratory" classes of the MSc in Biodiversity and Evolution at the University of Bologna.☆13Jan 13, 2026Updated last month
- Selection outlier scan with population branch statistic☆15Feb 21, 2024Updated 2 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Feb 13, 2020Updated 6 years ago
- Topology weighting by iterative sampling of sub-trees☆86Jan 5, 2025Updated last year
- Suit of R-scripts to perform landscape genomic analyses☆13May 25, 2020Updated 5 years ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆14May 29, 2024Updated last year
- General tools for genomic analyses.☆386Feb 28, 2025Updated last year
- Codes for the lettuce resequencing project in 2020☆30Jun 28, 2021Updated 4 years ago
- Scripts for analysis used during the course☆95Apr 30, 2024Updated last year
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago
- R Port of psmc☆17Mar 16, 2023Updated 2 years ago
- Prepare XML input files for divergence-time estimation with SNAPP☆20Dec 3, 2022Updated 3 years ago
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 8 years ago
- Scripts for population genetics analysis☆20Nov 10, 2022Updated 3 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Dec 4, 2025Updated 2 months ago
- Topology weighting from unphased genotypes of any ploidy☆22Dec 16, 2025Updated 2 months ago