liaochenlanruo / pgcgapLinks
The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
☆38Updated 2 years ago
Alternatives and similar repositories for pgcgap
Users that are interested in pgcgap are comparing it to the libraries listed below
Sorting:
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 5 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆59Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆26Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated 5 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated last week
- ☆52Updated 2 weeks ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆32Updated 2 years ago
- ☆16Updated 2 months ago
- Bacterial GWAS analysis☆42Updated this week
- whole genome MLST analysis☆45Updated last month
- MAG Circularization Method☆33Updated 3 years ago
- Discover and annotate the virome☆44Updated 2 weeks ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 8 months ago
- IslandPath standalone software☆33Updated last year
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- Extract metadata from biosamples in NCBI☆16Updated 4 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆17Updated 3 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- ☆41Updated 4 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 2 months ago
- ☆20Updated 10 months ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated 2 weeks ago