liaochenlanruo / pgcgapLinks
The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
☆39Updated 2 years ago
Alternatives and similar repositories for pgcgap
Users that are interested in pgcgap are comparing it to the libraries listed below
Sorting:
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- ☆20Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆33Updated 3 weeks ago
- A toolkit for prokaryotic comparative genomics☆51Updated last week
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 2 months ago
- ☆58Updated last year
- IslandPath standalone software☆33Updated last year
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆48Updated 2 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆42Updated 2 years ago
- Microbial Populations as Clusters Of Gene Transfer☆43Updated last year
- Discover and annotate the virome☆53Updated this week
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆59Updated 8 months ago
- Bacterial GWAS analysis☆44Updated 2 months ago
- code repo for mobileOG-db☆40Updated 4 months ago
- whole genome MLST analysis☆48Updated 3 months ago
- ☆53Updated 3 months ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 3 years ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Gene Absence Presence Identification tool.☆27Updated 6 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- ☆30Updated 2 years ago