YuLab-SMU / MicrobiomeProfilerLinks
A shiny package for microbiome functional enrichment analysis
☆37Updated 4 months ago
Alternatives and similar repositories for MicrobiomeProfiler
Users that are interested in MicrobiomeProfiler are comparing it to the libraries listed below
Sorting:
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last month
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- ☆41Updated 7 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆38Updated last year
- ☆24Updated 5 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆22Updated last year
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Updated 2 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated 2 weeks ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated 11 months ago
- ☆31Updated 7 months ago
- R implementation of the LEfSe method☆59Updated 4 months ago
- gutSMASH☆55Updated 8 months ago
- R shiny app for interactive microbiome analysis☆55Updated 2 months ago
- Statistical analysis for sparse high-throughput sequencing☆70Updated 8 months ago
- ☆13Updated 8 months ago
- Professional Comprehensive Omics Data Analysis☆23Updated 2 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆44Updated 2 weeks ago
- A microbiome analysis toolkit for R☆24Updated 2 years ago
- Evolutionary Transcriptomics with R☆45Updated this week
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- R package for downstream Microbiome analysis☆30Updated 8 months ago
- ☆15Updated 2 years ago