A shiny package for microbiome functional enrichment analysis
☆40Dec 23, 2025Updated 4 months ago
Alternatives and similar repositories for MicrobiomeProfiler
Users that are interested in MicrobiomeProfiler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Microbe-Metabolite INteractions-based metabolic profiles Predictor☆16Mar 17, 2023Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆51Nov 1, 2025Updated 6 months ago
- Microbiome Analysis Plotting and Visualization☆12Mar 23, 2026Updated last month
- A comprehensive R package for deep mining microbiome☆192Apr 2, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆26Jan 15, 2026Updated 3 months ago
- Microbiome profiling☆15Nov 20, 2025Updated 5 months ago
- an R package to biotype a community☆14Oct 19, 2021Updated 4 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆40Apr 12, 2026Updated 2 weeks ago
- R package for microbiome biomarker discovery☆197Feb 19, 2025Updated last year
- A general metagenomics data mining system focus on robust microbiome research☆60Mar 3, 2026Updated last month
- ☆78Oct 16, 2024Updated last year
- Functions to manipulate and visualize microbial community data☆12Sep 15, 2023Updated 2 years ago
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Feb 10, 2026Updated 2 months ago
- Omics Data Analysis Tools☆14Nov 26, 2024Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆72Dec 1, 2025Updated 5 months ago
- gutSMASH☆59Oct 3, 2025Updated 6 months ago
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Oct 8, 2025Updated 6 months ago
- R implementation of the LEfSe method☆65Updated this week
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- Command line client and Python libraries for CosmosID API☆12Oct 28, 2025Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- This is the supplementary code for CRC-multi-kingdom☆17Nov 8, 2021Updated 4 years ago
- download files in R using wget -c☆16Aug 20, 2025Updated 8 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆18Jul 15, 2025Updated 9 months ago
- ☆15May 1, 2025Updated last year
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆127Mar 30, 2026Updated last month
- Translate Words or Sentences via Online Translators☆60Feb 14, 2026Updated 2 months ago
- 🐦 spideog - Command line utility for Kraken2 reports.☆11Nov 30, 2020Updated 5 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Virus Identification By iteRative ANnoTation☆194Apr 15, 2024Updated 2 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 5 years ago
- An interactive radial tree for functional hierarchies and omics data visualization☆26Mar 27, 2026Updated last month
- A healthy human gut genome collection☆25Aug 21, 2025Updated 8 months ago
- This repository includes the code used in our multiomics BMI study.☆20Jul 6, 2023Updated 2 years ago
- ☆15Jul 25, 2025Updated 9 months ago
- Import qiime2 artifacts to R☆179Dec 12, 2024Updated last year