jiaonall / CRC-multi-kingdom
This is the supplementary code for CRC-multi-kingdom
☆17Updated 3 years ago
Alternatives and similar repositories for CRC-multi-kingdom:
Users that are interested in CRC-multi-kingdom are comparing it to the libraries listed below
- ☆11Updated 9 months ago
- A shiny package for microbiome functional enrichment analysis☆38Updated 4 months ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆30Updated 2 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆33Updated 3 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆27Updated 2 years ago
- R package to predict microbial loads☆14Updated last week
- ☆13Updated 3 months ago
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆12Updated last year
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 10 months ago
- Professional Comprehensive Omics Data Analysis☆15Updated 3 months ago
- ☆22Updated 5 years ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- ☆32Updated last year
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆14Updated 7 months ago
- ☆18Updated 2 years ago
- Analysis framework for integrating gut microbiome and host gene expression data☆32Updated 2 years ago
- ☆14Updated 2 years ago
- ☆18Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated last month
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 4 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 3 years ago
- ☆15Updated 3 months ago
- gutSMASH☆53Updated 3 months ago
- ☆18Updated 4 years ago
- A general metagenomics data mining system focus on robust microbiome research☆56Updated 6 months ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆13Updated last year
- ☆15Updated 4 months ago
- ☆15Updated 2 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 2 months ago
- Code and analysis results for the CRC shotgun meta-analysis☆38Updated 2 years ago