Alternatives and similar repositories for CRC-multi-kingdom:

Users that are interested in CRC-multi-kingdom are comparing it to the libraries listed below

• borenstein-lab / multi_view_integration_analysis
  ☆11Updated 7 months ago
• wangzlab / COPD_multiomics
  This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…
  ☆30Updated 2 years ago
• wdl2459 / ConQuR
  Batch effects removal for microbiome data via conditional quantile regression
  ☆27Updated 2 years ago
• GRONINGEN-MICROBIOME-CENTRE / DMP
  Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…
  ☆33Updated 3 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated 2 months ago
• segalab / SGVFinder
  ☆32Updated last year
• SegataLab / cmseq
  Set of utilities on sequences and BAM files
  ☆26Updated 3 years ago
• grp-bork / microbial_load_predictor
  R package to predict microbial loads
  ☆11Updated 4 months ago
• biobakery / shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…
  ☆28Updated 9 months ago
• muzafferarikan / gNOMO2
  gNOMO2 allows integrated multi-omics analyses of microbiomes
  ☆14Updated 5 months ago
• zjshi / snv_analysis_almeida2019
  ☆22Updated 4 years ago
• xiaolw95 / NetMoss
  ☆14Updated 2 years ago
• abdohlman / tcma_code
  Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.
  ☆12Updated last year
• blekhmanlab / host_gene_microbiome_interactions
  Analysis framework for integrating gut microbiome and host gene expression data
  ☆31Updated 2 years ago
• EvaYiwenWang / PLSDAbatch
  Development repository for R package 'PLSDAbatch ' hosted on Bioconductor.
  ☆13Updated 4 months ago
• qsu123 / multi_class_diagnosis
  ☆16Updated 2 years ago
• shihuang047 / 2bRAD-M
  ☆18Updated 2 years ago
• olabiyi / snakemake-workflow-qiime2
  Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2
  ☆14Updated 11 months ago
• ignasrum / hocort
  HoCoRT - Remove specific organisms from sequencing reads
  ☆15Updated last week
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆17Updated 8 months ago
• Asa12138 / pctax
  Professional Comprehensive Omics Data Analysis
  ☆14Updated last month
• YDaiLab / MiMeNet
  ☆19Updated 4 years ago
• Shenhav-and-Korem-labs / SCRuB
  ☆27Updated 2 weeks ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆30Updated 2 years ago
• elimoss / metagenomics_workflows
  Workflows for metagenomic sequence data processing and analysis.
  ☆17Updated 5 years ago
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆24Updated 9 months ago
• omixer / omixer-rpmR
  An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
  ☆11Updated 2 years ago
• ivlachos / agamemnon
  Accurate metagenomi/metatranscriptomic analysis pipeline
  ☆22Updated 3 years ago
• GRONINGEN-MICROBIOME-CENTRE / Groningen-Microbiome
  Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…
  ☆56Updated 3 months ago
• ncrna / PathogenTrack
  A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
  ☆27Updated last year