jiaonall / CRC-multi-kingdomLinks
This is the supplementary code for CRC-multi-kingdom
☆17Updated 3 years ago
Alternatives and similar repositories for CRC-multi-kingdom
Users that are interested in CRC-multi-kingdom are comparing it to the libraries listed below
Sorting:
- ☆12Updated last year
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆33Updated 3 years ago
- Professional Comprehensive Omics Data Analysis☆23Updated 4 months ago
- R package to predict microbial loads☆17Updated last month
- ☆18Updated 2 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 6 months ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- ☆32Updated 2 years ago
- Analysis framework for integrating gut microbiome and host gene expression data☆33Updated 3 years ago
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆13Updated last year
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 3 months ago
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆59Updated 4 months ago
- gutSMASH☆55Updated 3 weeks ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 9 months ago
- ☆21Updated 5 years ago
- ☆18Updated 3 years ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Updated last year
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14Updated 2 years ago
- ☆13Updated 10 months ago
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆41Updated 5 years ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- Analysing Metagenomic Species (MGS)☆42Updated 4 years ago
- ☆11Updated 3 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- ☆12Updated last year
- Code and analysis results for the CRC shotgun meta-analysis☆38Updated 3 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- Metagenomics Taxonomic Reads Assembly Single-Species☆16Updated 2 years ago