☆14Jun 26, 2025Updated 8 months ago
Alternatives and similar repositories for ngsLCA
Users that are interested in ngsLCA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A post-mapping authentication toolkit for ancient metagenomics☆19Jan 19, 2026Updated 2 months ago
- ☆21Dec 15, 2023Updated 2 years ago
- mapping pipeline for ancient DNA☆34Feb 20, 2026Updated last month
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Jun 27, 2023Updated 2 years ago
- Remove human reads from a sequencing run☆48Mar 9, 2026Updated 2 weeks ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 2 months ago
- Ancient microbiome snakemake workflow☆27Apr 11, 2025Updated 11 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 4 months ago
- ☆14Feb 9, 2026Updated last month
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆53Jan 23, 2026Updated 2 months ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 7 months ago
- Additional supplementary information and code, data repository for Fellows Yates, J.A. et al. (2021) PNAS. DOI: http://dx.doi.org/10.1073…☆14Oct 20, 2021Updated 4 years ago
- Differential quantification of alternative splicing events on spliced pangenome graphs☆15Jan 30, 2026Updated last month
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆33May 24, 2023Updated 2 years ago
- ☆15Apr 3, 2025Updated 11 months ago
- ☆19May 10, 2023Updated 2 years ago
- TOPAS application for simulating clustered DNA damage☆11Sep 9, 2025Updated 6 months ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆36Mar 4, 2026Updated 2 weeks ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆20Jul 26, 2024Updated last year
- rtry: Preprocessing Plant Trait Data☆26Aug 21, 2023Updated 2 years ago
- EukRef curation pipeline☆13May 11, 2021Updated 4 years ago
- Exploration, clustering, visualization and classification of DNA damage patterns☆19Jan 15, 2021Updated 5 years ago
- ☆13Feb 22, 2024Updated 2 years ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 5 years ago
- functions for analyzing phyloseq data☆28Feb 4, 2025Updated last year
- Introduction to Ancient Metagenomics Book☆15Feb 17, 2026Updated last month
- Repository of our application for human-augmented binning☆27Apr 26, 2021Updated 4 years ago
- A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage☆18Nov 18, 2023Updated 2 years ago
- Distance denoise by Entropy☆15Oct 17, 2025Updated 5 months ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Jan 5, 2025Updated last year
- A simple tool to calculate metrics from a BAM file and filter references with uneven coverages☆22Jan 29, 2026Updated last month
- Damage parameter estimation for ancient DNA☆19Apr 8, 2025Updated 11 months ago
- python multiprocessing download file☆20Aug 27, 2017Updated 8 years ago
- ☆30Updated this week
- Data and scripts used in the oneKP capstone analyses☆13Apr 5, 2022Updated 3 years ago
- A tool for phylogenetic interpretation of human mtDNA sequence mixtures☆17Oct 6, 2023Updated 2 years ago
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆32Jun 21, 2017Updated 8 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Oct 29, 2020Updated 5 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Oct 29, 2025Updated 4 months ago