miwipe / ngsLCALinks
☆13Updated 4 months ago
Alternatives and similar repositories for ngsLCA
Users that are interested in ngsLCA are comparing it to the libraries listed below
Sorting:
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆32Updated last week
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated last year
- Working with the outputs of sourmash in R☆27Updated 2 years ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆13Updated 6 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 months ago
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆31Updated 2 months ago
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 6 months ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆19Updated last year
- R package for microbial pangenomics☆24Updated 3 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆14Updated 2 weeks ago
- Predict plasmids from uncorrected long read data☆41Updated last week
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 3 weeks ago
- ☆22Updated 2 years ago
- Discover and annotate the virome☆53Updated 3 weeks ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated 2 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- A functional profiler for metagenomes using FracMinHash☆20Updated 3 months ago
- Gene-flank analysis tool☆33Updated 10 months ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆68Updated 3 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Tools for analyzing trees☆13Updated 6 months ago
- Remove human reads from a sequencing run☆40Updated 3 months ago