nygenome / lancetLinks
Microassembly based somatic variant caller for NGS data
☆154Updated 3 years ago
Alternatives and similar repositories for lancet
Users that are interested in lancet are comparing it to the libraries listed below
Sorting:
- phasing and Allele Specific Expression from RNA-seq☆115Updated 11 months ago
- Relevant papers for CNV and SV approaches☆94Updated 7 months ago
- VarDict☆198Updated last year
- Bayesian genotyper for structural variants☆134Updated 4 years ago
- Structural variation and indel detection by local assembly☆246Updated last week
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated last year
- A tool set for short variant discovery in genetic sequence data.☆197Updated 4 years ago
- ☆82Updated 6 years ago
- ABRA2☆92Updated 2 years ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 6 months ago
- Tools for processing and analyzing structural variants.☆152Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆160Updated 2 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆133Updated 2 years ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆71Updated 7 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 9 months ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- This repository contains information about latest release from Genome in a Bottle project☆74Updated 5 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆149Updated 10 months ago
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- ☆78Updated 11 years ago
- Copy number calling and variant classification using targeted short read sequencing☆136Updated 2 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆102Updated 4 years ago
- NEAT read simulation tools☆98Updated 3 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆106Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago