nygenome / lancetLinks
Microassembly based somatic variant caller for NGS data
☆154Updated 3 years ago
Alternatives and similar repositories for lancet
Users that are interested in lancet are comparing it to the libraries listed below
Sorting:
- Script to automatically create and run IGV snapshot batchscripts☆142Updated 2 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆147Updated last week
- VarDict☆198Updated last year
- Relevant papers for CNV and SV approaches☆94Updated 10 months ago
- NEAT read simulation tools☆101Updated 3 years ago
- ☆82Updated 6 years ago
- Structural variation and indel detection by local assembly☆246Updated this week
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- ABRA2☆92Updated 2 years ago
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- A tool set for short variant discovery in genetic sequence data.☆201Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- SV detection from paired end reads mapping☆117Updated 6 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆163Updated 2 years ago
- Software program for checking sample matching for NGS data☆135Updated last year
- BAM Statistics, Feature Counting and Annotation☆149Updated last week
- GATK RNA-Seq Variant Calling in Nextflow☆136Updated 2 years ago
- Bayesian genotyper for structural variants☆134Updated 4 years ago
- MuTect -- Accurate and sensitive cancer mutation detection☆100Updated 2 years ago
- Platypus Variant Caller☆108Updated last year
- A powerful toolset for genome arithmetic.☆142Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- Read visualizer for structural variants☆84Updated 7 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆137Updated this week
- tools for adding mutations to existing .bam files, used for testing mutation callers☆244Updated 11 months ago