finkelsteinlab / freebarcodesLinks
FREE Divergence Error-Correcting DNA Barcodes
☆10Updated 7 years ago
Alternatives and similar repositories for freebarcodes
Users that are interested in freebarcodes are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Updated 2 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- ☆20Updated 8 months ago
- interactive plots for differential expression analysis☆34Updated 7 months ago
- ☆21Updated last year
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 10 months ago
- Isoform-level functional RNA-Seq analysis 🧬☆36Updated 3 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆31Updated 10 months ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Comprehensive Human Expressed SequenceS☆19Updated 6 months ago
- Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆20Updated 3 weeks ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- Useful tools for working with Salmon output☆39Updated 5 years ago
- Filter and prioritize fusion calls☆20Updated 2 weeks ago
- ☆30Updated 7 months ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Updated 4 months ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Updated 3 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆45Updated 2 months ago
- iread☆25Updated 4 years ago