finkelsteinlab / freebarcodes
FREE Divergence Error-Correcting DNA Barcodes
☆8Updated 6 years ago
Alternatives and similar repositories for freebarcodes:
Users that are interested in freebarcodes are comparing it to the libraries listed below
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- interactive plots for differential expression analysis☆32Updated 3 weeks ago
- ☆14Updated last year
- ☆24Updated 11 months ago
- ☆21Updated 9 months ago
- ☆19Updated 3 months ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- A command line tool to compute mapping statistics from a BAM file☆23Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Personal diploid genome creation and coordinate conversion☆24Updated last month
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Updated 8 months ago
- ☆18Updated 4 years ago
- Useful tools for working with Salmon output☆37Updated 4 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- Comprehensive Human Expressed SequenceS☆16Updated 7 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated last year
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 8 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- ☆23Updated 5 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 5 months ago