DormanLab / AmpliCILinks
AmpliCI, a model-based algorithm for denoising Illumina amplicon data.
☆23Updated 4 months ago
Alternatives and similar repositories for AmpliCI
Users that are interested in AmpliCI are comparing it to the libraries listed below
Sorting:
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).☆15Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Evolutionary Transcriptomics with R☆45Updated 3 weeks ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆33Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆24Updated 3 months ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated 3 months ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 8 months ago
- Nanopore Real-Time Analysis Tool☆15Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 4 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- ☆27Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 5 months ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Updated 3 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Updated 2 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆12Updated 3 weeks ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 3 months ago
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆50Updated 8 months ago
- ☆28Updated 2 years ago