pinellolab / AmpUMILinks
Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
☆42Updated 2 months ago
Alternatives and similar repositories for AmpUMI
Users that are interested in AmpUMI are comparing it to the libraries listed below
Sorting:
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated last month
- for visual evaluation of read support for structural variation☆55Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Gene Fusion Visualiser☆51Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 7 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆55Updated 8 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Human reference genome analysis sets☆55Updated 2 years ago
- A software for calculating telomere length☆72Updated 7 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 4 months ago
- Merging paired-end reads and removing adapters☆46Updated last month
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆54Updated 2 weeks ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- TIDDIT - structural variant calling☆77Updated 6 months ago
- Python package to annotate and visualize gene fusions.☆64Updated last year
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- alternative splicing analysis pipeline☆20Updated 4 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated last month
- Merging paired-end reads and removing adapters☆30Updated 5 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- GEM-Mapper v3☆58Updated 7 months ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- Long read to rMATS☆32Updated 2 years ago