pinellolab / AmpUMILinks
Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
☆41Updated last year
Alternatives and similar repositories for AmpUMI
Users that are interested in AmpUMI are comparing it to the libraries listed below
Sorting:
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 8 months ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆28Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- for visual evaluation of read support for structural variation☆54Updated last year
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Merging paired-end reads and removing adapters☆30Updated 5 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 2 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 8 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 4 years ago
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated last year
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- New version of JACUSA -> 2.0☆27Updated last month
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Software for performing UDiTaS sequencing analysis.☆13Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- ☆22Updated 6 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆27Updated 8 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated last month
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 4 months ago
- ☆36Updated 2 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last month
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆62Updated 2 weeks ago