Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for amplicons
☆53Feb 7, 2018Updated 8 years ago
Alternatives and similar repositories for FLASH2
Users that are interested in FLASH2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An application to remove PCR duplicates from high throughput sequencing runs.☆11Apr 22, 2018Updated 7 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Jun 6, 2023Updated 2 years ago
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆51Mar 25, 2026Updated 3 weeks ago
- Please switch to https://github.com/OpenGene/defastq☆29Jul 28, 2018Updated 7 years ago
- Ultra-fast 5' and 3' demultiplexer☆29Apr 23, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- LAVA: Lightweight Assignment of Variant Alleles☆17Dec 27, 2017Updated 8 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- ☆97Sep 21, 2022Updated 3 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆27Nov 14, 2025Updated 5 months ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated last month
- ☆20Jul 16, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Rep-Seq data analysis tutorial☆12Dec 6, 2017Updated 8 years ago
- ☆10Oct 31, 2022Updated 3 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated 2 years ago
- Assembly by Reduced Complexity (ARC)☆42Mar 29, 2016Updated 10 years ago
- Error correction for Illumina RNA-seq reads☆68Jan 4, 2026Updated 3 months ago
- Gene orthologs for model organisms in a tidy data format☆15Sep 29, 2022Updated 3 years ago
- PAGAN2 multiple sequence aligner☆12Jul 2, 2024Updated last year
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 4 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Manipulate genomic features and validate the syntax and reference sequence of your GFF3 files☆10Dec 26, 2022Updated 3 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Aug 24, 2025Updated 7 months ago
- Tools for processing UMI RNA-tag data☆132Mar 15, 2023Updated 3 years ago
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated last year
- Fast python code to merge paired-end reads☆13Oct 29, 2021Updated 4 years ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆67Apr 21, 2025Updated 11 months ago
- Intervene: a tool for intersection and visualization of multiple genomic region and gene sets☆147Oct 28, 2023Updated 2 years ago
- Split Kmer Analysis☆66May 26, 2022Updated 3 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Sep 22, 2025Updated 6 months ago
- Variant call adjudication☆16Jun 13, 2024Updated last year
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆82Mar 2, 2023Updated 3 years ago
- ☆11Apr 3, 2023Updated 3 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- Error correction for Oxford Nanopore data☆47May 29, 2021Updated 4 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 7 years ago