dstreett / FLASH2Links
Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for amplicons
☆51Updated 7 years ago
Alternatives and similar repositories for FLASH2
Users that are interested in FLASH2 are comparing it to the libraries listed below
Sorting:
- A versatile toolkit for k-mers with taxonomic information☆81Updated 4 months ago
- Merging paired-end reads and removing adapters☆46Updated 2 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 8 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 4 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- PHAST☆78Updated this week
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- A catalogue of available long read sequencing data analysis tools☆83Updated this week
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆92Updated 5 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- Evolutionary Transcriptomics with R☆47Updated last month
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆50Updated 4 years ago
- A python parser to simplify and build the VCF (Variant Call Format).☆49Updated last year
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆65Updated last month
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- A reference viral database (RVDB)☆26Updated 7 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- BigWig and BAM utilities☆99Updated last year
- Fully automated generation of UCSC assembly hubs☆35Updated last year
- Maximum likelihood demultiplexing☆50Updated 10 months ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- Error correction for Illumina RNA-seq reads☆67Updated last week
- new repo☆28Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago