mengyao / Complete-Striped-Smith-Waterman-Library
☆302Updated last month
Alternatives and similar repositories for Complete-Striped-Smith-Waterman-Library:
Users that are interested in Complete-Striped-Smith-Waterman-Library are comparing it to the libraries listed below
- Pairwise Sequence Alignment Library☆246Updated last year
- Fast genome and metagenome distance estimation using MinHash☆397Updated last year
- Efficient pythonic random access to fasta subsequences☆464Updated 3 months ago
- Mummer alignment tool☆480Updated this week
- C++ API & command-line toolkit for working with BAM data☆421Updated 6 months ago
- A fast approximate aligner for long DNA sequences☆276Updated 3 months ago
- Fast and frugal disk based k-mer counter☆282Updated 2 months ago
- SIMD partial order alignment tool/library☆163Updated last year
- Program for aligning DNA sequences, a pairwise aligner.☆206Updated last month
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆455Updated 2 weeks ago
- Code examples of fast and simple k-mer counters for tutorial purposes☆167Updated 4 years ago
- Toolset for SV simulation, comparison and filtering☆370Updated last year
- HMMER: biological sequence analysis using profile HMMs☆329Updated this week
- A fast multi-threaded k-mer counter☆482Updated 10 months ago
- the pangenome graph builder☆409Updated 3 weeks ago
- GFF and GTF file manipulation and interconversion☆292Updated 9 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆599Updated 2 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Updated 2 years ago
- Sequence-to-graph mapper and graph generator☆430Updated 8 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆568Updated last month
- ☆263Updated last month
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆310Updated last year
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆285Updated 6 years ago
- Next generation sequencing reads de novo assembler.☆225Updated last year
- a toolkit for working with Oxford nanopore data☆242Updated last year
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆306Updated 8 months ago
- Haplotype VCF comparison tools☆422Updated last year
- WFA-lib: Wavefront alignment algorithm library v2☆165Updated last week
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆276Updated 8 months ago
- ☆261Updated 2 months ago