Alternatives and similar repositories for Complete-Striped-Smith-Waterman-Library

Users that are interested in Complete-Striped-Smith-Waterman-Library are comparing it to the libraries listed below

• jeffdaily / parasail
  Pairwise Sequence Alignment Library
  ☆255Updated last year
• marbl / Mash
  Fast genome and metagenome distance estimation using MinHash
  ☆408Updated last year
• refresh-bio / KMC
  Fast and frugal disk based k-mer counter
  ☆292Updated 6 months ago
• lh3 / kmer-cnt
  Code examples of fast and simple k-mer counters for tutorial purposes
  ☆170Updated 5 years ago
• EddyRivasLab / hmmer
  HMMER: biological sequence analysis using profile HMMs
  ☆365Updated 4 months ago
• rvaser / spoa
  SIMD partial order alignment tool/library
  ☆171Updated last year
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆470Updated this week
• pezmaster31 / bamtools
  C++ API & command-line toolkit for working with BAM data
  ☆424Updated 2 weeks ago
• jeffdaily / parasail-python
  Python bindings for the parasail C library.
  ☆101Updated 9 months ago
• Illumina / hap.py
  Haplotype VCF comparison tools
  ☆432Updated last year
• gmarcais / Jellyfish
  A fast multi-threaded k-mer counter
  ☆501Updated last year
• nanopore-wgs-consortium / NA12878
  Data and analysis for NA12878 genome on nanopore
  ☆392Updated 2 years ago
• lh3 / ksw2
  Global alignment and alignment extension
  ☆132Updated last year
• marbl / MashMap
  A fast approximate aligner for long DNA sequences
  ☆282Updated 7 months ago
• lh3 / minigraph
  Sequence-to-graph mapper and graph generator
  ☆444Updated last year
• dellytools / delly
  DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
  ☆470Updated last month
• fritzsedlazeck / SURVIVOR
  Toolset for SV simulation, comparison and filtering
  ☆379Updated last year
• rrwick / Bandage
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆617Updated 2 years ago
• rrwick / Basecalling-comparison
  A comparison of different Oxford Nanopore basecallers
  ☆316Updated 5 years ago
• smarco / WFA2-lib
  WFA-lib: Wavefront alignment algorithm library v2
  ☆185Updated 3 weeks ago
• DaehwanKimLab / hisat2
  Graph-based alignment (Hierarchical Graph FM index)
  ☆502Updated 6 months ago
• marbl / canu
  A single molecule sequence assembler for genomes large and small.
  ☆677Updated last month
• dzerbino / velvet
  Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…
  ☆290Updated 6 years ago
• isovic / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…
  ☆279Updated last year
• smarco / WFA-paper
  Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment
  ☆200Updated 3 years ago
• BenLangmead / bowtie
  An ultrafast memory-efficient short read aligner
  ☆261Updated 3 years ago
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆338Updated this week
• lastz / lastz
  Program for aligning DNA sequences, a pairwise aligner.
  ☆221Updated 2 months ago
• pmelsted / bifrost
  Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
  ☆212Updated last year
• pcingola / SnpEff
  ☆277Updated 3 months ago