Alternatives and similar repositories for Complete-Striped-Smith-Waterman-Library

Users that are interested in Complete-Striped-Smith-Waterman-Library are comparing it to the libraries listed below

• jeffdaily / parasail
  Pairwise Sequence Alignment Library
  ☆264Updated last month
• gmarcais / Jellyfish
  A fast multi-threaded k-mer counter
  ☆515Updated last year
• marbl / Mash
  Fast genome and metagenome distance estimation using MinHash
  ☆420Updated 3 weeks ago
• rvaser / spoa
  SIMD partial order alignment tool/library
  ☆170Updated 3 weeks ago
• smarco / WFA-paper
  Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment
  ☆199Updated 3 years ago
• refresh-bio / KMC
  Fast and frugal disk based k-mer counter
  ☆303Updated 2 weeks ago
• BenLangmead / bowtie
  An ultrafast memory-efficient short read aligner
  ☆264Updated 3 years ago
• seqan / seqan
  SeqAn's official repository.
  ☆496Updated last month
• lh3 / kmer-cnt
  Code examples of fast and simple k-mer counters for tutorial purposes
  ☆170Updated 5 years ago
• pmelsted / bifrost
  Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
  ☆219Updated 3 weeks ago
• marbl / MashMap
  A fast approximate aligner for long DNA sequences
  ☆283Updated last year
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆479Updated last month
• smarco / WFA2-lib
  WFA-lib: Wavefront alignment algorithm library v2
  ☆193Updated 5 months ago
• pezmaster31 / bamtools
  C++ API & command-line toolkit for working with BAM data
  ☆430Updated 4 months ago
• amplab / snap
  Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
  ☆295Updated last month
• dzerbino / velvet
  Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…
  ☆293Updated 7 years ago
• lh3 / minigraph
  Sequence-to-graph mapper and graph generator
  ☆456Updated 2 months ago
• maickrau / GraphAligner
  ☆275Updated 2 months ago
• GFA-spec / GFA-spec
  Graphical Fragment Assembly (GFA) Format Specification
  ☆215Updated last year
• lastz / lastz
  Program for aligning DNA sequences, a pairwise aligner.
  ☆228Updated 4 months ago
• lh3 / ksw2
  Global alignment and alignment extension
  ☆136Updated 2 years ago
• lh3 / wgsim
  Reads simulator
  ☆281Updated 4 years ago
• aquaskyline / SOAPdenovo2
  Next generation sequencing reads de novo assembler.
  ☆237Updated 3 weeks ago
• dellytools / delly
  DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
  ☆486Updated 2 months ago
• mummer4 / mummer
  Mummer alignment tool
  ☆526Updated 8 months ago
• lmdu / pyfastx
  a python package for fast random access to sequences from plain and gzipped FASTA/Q files
  ☆289Updated 9 months ago
• bcgsc / abyss
  Assemble large genomes using short reads
  ☆322Updated 6 months ago
• chanzuckerberg / shasta
  [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
  ☆273Updated 3 years ago
• nanopore-wgs-consortium / NA12878
  Data and analysis for NA12878 genome on nanopore
  ☆396Updated 2 years ago
• Illumina / hap.py
  Haplotype VCF comparison tools
  ☆446Updated last year