gui11aume / starcode
All pairs search and sequence clustering
☆91Updated 2 years ago
Alternatives and similar repositories for starcode:
Users that are interested in starcode are comparing it to the libraries listed below
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆53Updated 9 years ago
- Very simple, pure python, BAM file reader☆79Updated 5 years ago
- ☆57Updated 4 years ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆112Updated 4 months ago
- phasing and Allele Specific Expression from RNA-seq☆111Updated 4 months ago
- SV detection tool for nanopore sequence reads☆89Updated 2 months ago
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆108Updated 2 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆192Updated 3 weeks ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆111Updated last week
- ☆49Updated last year
- Pairwise whole genome aligner☆140Updated this week
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆91Updated 9 months ago
- This repository contains information about latest release from Genome in a Bottle project☆73Updated 5 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆110Updated 11 months ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆111Updated last year
- Jasmine: SV Merging Across Samples☆181Updated 2 years ago
- Small utilities for working with fastq sequence files.☆115Updated 2 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆141Updated 8 years ago
- Bayesian genotyper for structural variants☆126Updated 3 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 9 months ago
- Data from the Human PanGenomics Project☆60Updated 3 years ago
- Read Until client library for Nanopore Sequencing☆103Updated 2 months ago
- ClairS - a deep-learning method for long-read somatic small variant calling☆75Updated last week
- ☆76Updated 2 weeks ago
- Simple FASTQ quality assessment using Python☆109Updated 3 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆89Updated 4 years ago
- Python programs for processing GFF3 files☆95Updated 7 months ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆103Updated last month
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 5 months ago