Alternatives and similar repositories for starcode:

Users that are interested in starcode are comparing it to the libraries listed below

• HKU-BAL / ClairS
  ClairS - a deep-learning method for long-read somatic small variant calling
  ☆78Updated 2 months ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 5 years ago
• vanheeringen-lab / gimmemotifs
  Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…
  ☆114Updated last year
• ucagenomix / sicelore
  Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…
  ☆72Updated last year
• mitenjain / nanopore
  UCSC Nanopore group's software pipeline for reference-based sequence analysis
  ☆53Updated 9 years ago
• GoekeLab / sg-nex-data
  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
  ☆114Updated 2 weeks ago
• open2c / distiller-nf
  A modular Hi-C mapping pipeline
  ☆88Updated last month
• 4dn-dcic / hic2cool
  Lightweight converter between hic and cool contact matrices.
  ☆67Updated 6 months ago
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆145Updated 2 weeks ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆70Updated 3 months ago
• GreenleafLab / NucleoATAC
  nucleosome calling using ATAC-seq
  ☆106Updated 4 years ago
• ENCODE-DCC / hic-pipeline
  HiC uniform processing pipeline
  ☆58Updated last year
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆113Updated last week
• Kingsford-Group / scallop
  Scallop is a reference-based transcriptome assembler for RNA-seq
  ☆89Updated 3 years ago
• open2c / pairtools
  Extract 3D contacts (.pairs) from sequencing alignments
  ☆107Updated last week
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆117Updated last week
• CRG-Barcelona / bwtool
  A tool for bigWig files.
  ☆118Updated 6 years ago
• nanoporetech / bwapy
  Python bindings to bwa mem
  ☆32Updated 4 years ago
• skovaka / uncalled4
  ☆45Updated 3 weeks ago
• epi2me-labs / wf-transcriptomes
  ☆83Updated 3 weeks ago
• novoalab / EpiNano
  Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
  ☆113Updated 7 months ago
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆109Updated 2 years ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated 4 months ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆75Updated last month
• skrakau / PureCLIP
  Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
  ☆29Updated 3 years ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆81Updated this week
• CshlSiepelLab / phast
  PHAST
  ☆71Updated last month
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆23Updated 6 months ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆88Updated 2 years ago