OpenGene / defqLinks
Please switch to https://github.com/OpenGene/defastq
☆29Updated 6 years ago
Alternatives and similar repositories for defq
Users that are interested in defq are comparing it to the libraries listed below
Sorting:
- Adapters for trimming☆30Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Structural variant caller☆54Updated 3 years ago
- A collection of command line tools for working with sequencing data☆51Updated 3 weeks ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- ☆51Updated 5 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated last month
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Ultra-efficient taxonomic mapping of NGS data☆52Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated last year
- ☆63Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Evolutionary Transcriptomics with R☆44Updated last week
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆49Updated 6 months ago
- Filter SAM file for soft and hard clipped alignments☆49Updated last year
- Dot: An interactive dot plot viewer for comparative genomics☆7Updated 5 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago