OpenGene / defqLinks
Please switch to https://github.com/OpenGene/defastq
☆29Updated 7 years ago
Alternatives and similar repositories for defq
Users that are interested in defq are comparing it to the libraries listed below
Sorting:
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- A collection of command line tools for working with sequencing data☆52Updated last week
- Adapters for trimming☆30Updated 7 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Updated last year
- A software for calculating telomere length☆73Updated 7 years ago
- ☆51Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 8 months ago
- Mapped QC analysis program☆43Updated 7 years ago
- ☆46Updated 6 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Updated 4 years ago
- ☆26Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- ☆78Updated 11 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Updated last year
- RUFUS k-mer based genomic variant detection☆54Updated last month
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 5 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated 5 months ago
- Tools for bam file processing☆55Updated 10 years ago
- BigWig and BAM utilities☆102Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Updated 4 months ago
- ☆54Updated 3 years ago