BimberLab / DISCVRSeq
A collection of command line tools for working with sequencing data
☆51Updated this week
Alternatives and similar repositories for DISCVRSeq:
Users that are interested in DISCVRSeq are comparing it to the libraries listed below
- perSVade: personalized Structural Variation detection☆38Updated last month
- Error correction of ONT transcript reads☆58Updated last year
- ENCODE long read RNA-seq pipeline☆44Updated 2 years ago
- ☆39Updated 8 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- Filter SAM file for soft and hard clipped alignments☆46Updated 7 months ago
- Simple pileup-based variant caller☆85Updated 9 months ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 7 years ago
- Comprehensive benchmark of structural variant callers☆44Updated 3 years ago
- ☆79Updated 8 months ago
- Same species annotation lift over pipeline.☆96Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Structural variant merging tool☆49Updated 4 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆46Updated 4 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- De novo annotation of young retrotransposons☆46Updated 2 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆70Updated last month
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 3 months ago
- web documentation for Trinotate☆48Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- my bin directory☆44Updated 2 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆57Updated 3 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆110Updated 3 weeks ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆52Updated last year
- for visual evaluation of read support for structural variation☆51Updated 7 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month