BimberLab / DISCVRSeqLinks
A collection of command line tools for working with sequencing data
☆52Updated this week
Alternatives and similar repositories for DISCVRSeq
Users that are interested in DISCVRSeq are comparing it to the libraries listed below
Sorting:
- parallelized blat with multi-threads support☆53Updated 9 months ago
- ☆51Updated 6 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- ☆49Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- Structural variant caller☆55Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Structural variant merging tool☆55Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 6 months ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆45Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 10 months ago
- Powerful statistics for VCF files☆72Updated this week
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- python plotly Circos from VCF☆40Updated last year
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- A software for calculating telomere length☆72Updated 7 years ago