mozack / abra2Links
ABRA2
☆95Updated 3 years ago
Alternatives and similar repositories for abra2
Users that are interested in abra2 are comparing it to the libraries listed below
Sorting:
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- A tool set for short variant discovery in genetic sequence data.☆204Updated 4 years ago
- Tools for processing and analyzing structural variants.☆156Updated 3 years ago
- SV detection from paired end reads mapping☆118Updated 6 years ago
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Updated 4 months ago
- A tool for profiling long STRs from short reads☆104Updated 4 years ago
- NEAT read simulation tools☆101Updated 3 years ago
- Bayesian genotyper for structural variants☆136Updated 4 years ago
- Structural variation and indel detection by local assembly☆250Updated 4 months ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- ☆91Updated 4 years ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- VarDict☆201Updated 2 years ago
- BAM Statistics, Feature Counting and Annotation☆152Updated last month
- ☆122Updated 5 months ago
- WisecondorX — An evolved WISECONDOR☆109Updated last month
- Whole Genome Simulator for Next-Generation Sequencing☆102Updated 3 weeks ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆175Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆175Updated last year
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 8 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆195Updated 2 weeks ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆115Updated 4 years ago