ikalatskaya / ISOWNLinks
☆46Updated 6 years ago
Alternatives and similar repositories for ISOWN
Users that are interested in ISOWN are comparing it to the libraries listed below
Sorting:
- Concordance and contamination estimator for tumor–normal pairs☆59Updated last year
- CN-Learn☆30Updated 5 years ago
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- ☆54Updated 2 years ago
- QDNAseq package for Bioconductor☆53Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated last month
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Burden testing against public controls☆50Updated last year
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- ☆14Updated 2 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 6 months ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Updated 4 years ago
- ☆43Updated last year
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆44Updated 6 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- R package designed to simplify structural variant analysis☆74Updated 4 years ago
- ☆26Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- ☆21Updated last month
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago