Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.
☆92Jun 10, 2026Updated last week
Alternatives and similar repositories for ANANSE
Users that are interested in ANANSE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆128Jun 9, 2026Updated last week
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆169Jun 10, 2026Updated last week
- ☆13Feb 16, 2019Updated 7 years ago
- ☆19Jul 8, 2021Updated 4 years ago
- genes and genomes at your fingertips☆413Jun 9, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆30Mar 19, 2026Updated 3 months ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆57Apr 14, 2023Updated 3 years ago
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 3 years ago
- CRCmapper: map core regulatory circuitry☆14Nov 23, 2020Updated 5 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆73Apr 12, 2024Updated 2 years ago
- ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq).☆26Feb 3, 2022Updated 4 years ago
- R client for the OmniPath web service☆166Apr 29, 2026Updated last month
- omics data analysis using clusterProfiler ;)☆15Jun 6, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆37Jul 1, 2024Updated last year
- scRNAseq integration with triplet neural networks☆41Feb 2, 2026Updated 4 months ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 3 years ago
- ☆12Sep 20, 2019Updated 6 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 6 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆135May 5, 2025Updated last year
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆23Oct 15, 2024Updated last year
- TFregulomeR reveals transcription factors’ context-specific features and functions☆15Apr 18, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆223Feb 4, 2026Updated 4 months ago
- countsimQC - Compare characteristic features of count data sets☆30Apr 28, 2026Updated last month
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- R package for gene selection using k-NN graphs.☆14Jun 12, 2023Updated 3 years ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆154Jan 20, 2023Updated 3 years ago
- A Python package for gene network analysis☆33Jun 22, 2022Updated 3 years ago
- ☆13Nov 19, 2021Updated 4 years ago
- Detection of super-enhancers in cancer data☆21Apr 10, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Exon-Intron Split Analysis (EISA) in R☆17Apr 29, 2026Updated last month
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆56Jun 9, 2026Updated last week
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆180Dec 8, 2022Updated 3 years ago
- Models and datasets for perturbational single-cell omics☆179Aug 19, 2022Updated 3 years ago
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆153Feb 13, 2025Updated last year