stracquadaniolab / pygnaLinks
A Python package for gene network analysis
☆32Updated 3 years ago
Alternatives and similar repositories for pygna
Users that are interested in pygna are comparing it to the libraries listed below
Sorting:
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 4 years ago
- Single Cell Consensus Clustering with Speed☆20Updated 2 years ago
- python implementation of the PAGE algorithm☆18Updated last year
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- Summary statistics for repertoires☆17Updated 2 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 10 months ago
- script + metadata = standalone component☆44Updated last week
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 3 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆20Updated 2 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆57Updated 6 months ago
- High-definition modeling of chromatin + transcriptomics data☆25Updated 7 months ago
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆16Updated 3 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆18Updated 5 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Code to run OncoSig Analyses☆18Updated 5 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆66Updated 4 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆39Updated last month
- Network Visualization using both GUI and Programming☆29Updated 6 months ago
- Kdrew's scripts for handling protein complex map data☆14Updated 5 months ago
- Universal RObust Peak Annotator☆16Updated last year
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 5 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆46Updated 2 years ago
- epigenome analysis to rank transcription factors☆14Updated 5 years ago
- Core functionality of the CGAT code☆34Updated 3 months ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆27Updated last year
- ARCHS4 RNA-seq processing scripts and web server pages.☆61Updated 5 years ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 3 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆41Updated 2 weeks ago