stracquadaniolab / pygnaLinks
A Python package for gene network analysis
☆32Updated 3 years ago
Alternatives and similar repositories for pygna
Users that are interested in pygna are comparing it to the libraries listed below
Sorting:
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Summary statistics for repertoires☆17Updated 2 years ago
- python implementation of the PAGE algorithm☆18Updated last year
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 3 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 9 months ago
- Single Cell Consensus Clustering with Speed☆20Updated 2 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆65Updated 4 years ago
- Code to run OncoSig Analyses☆18Updated 5 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated 3 weeks ago
- Network Visualization using both GUI and Programming☆29Updated 5 months ago
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆16Updated 2 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Kdrew's scripts for handling protein complex map data☆14Updated 5 months ago
- High-definition modeling of chromatin + transcriptomics data☆25Updated 7 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆55Updated 6 months ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 3 years ago
- DRUGZ software☆24Updated 4 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆18Updated last year
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆18Updated 5 years ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- Snakemake pipeline for microexon discovery and quantification☆20Updated 10 months ago
- script + metadata = standalone component☆44Updated last month
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆44Updated 3 weeks ago