vanheeringen-lab / gimmemotifs
Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
☆110Updated 11 months ago
Related projects ⓘ
Alternatives and complementary repositories for gimmemotifs
- nucleosome calling using ATAC-seq☆106Updated 3 years ago
- Publication quality NGS track plotting☆108Updated 2 years ago
- machine-readable file format for genomic library sequence and structure☆114Updated 2 weeks ago
- A tool for bigWig files.☆118Updated 6 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆66Updated last month
- Tools for working with BUS files☆92Updated last month
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated last year
- HMMRATAC peak caller for ATAC-seq data☆99Updated last week
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆99Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆101Updated 4 months ago
- SNV calling from single cell sequencing☆84Updated last week
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆61Updated 3 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- A modular Hi-C mapping pipeline☆87Updated 11 months ago
- Generate IGV style locus tracks from bigWig files in R☆141Updated 3 weeks ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆50Updated 3 years ago
- Check strandedness of RNA-Seq fastq files☆115Updated 2 years ago
- mgatk: mitochondrial genome analysis toolkit☆103Updated 8 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆121Updated 3 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆78Updated 4 months ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆32Updated 4 months ago
- ☆75Updated 2 weeks ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆88Updated 3 months ago
- Quantification of transposable element expression using RNA-seq☆64Updated 9 months ago
- Tutorial Website☆53Updated 3 years ago
- Links to ATAC-seq analysis tools☆50Updated 3 years ago
- ☆115Updated last year
- Estimation of Promoter Activity from RNA-Seq data☆49Updated 2 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆66Updated 2 weeks ago