Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
☆169Jun 22, 2026Updated 2 months ago
Alternatives and similar repositories for seq2science
Users that are interested in seq2science are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- genes and genomes at your fingertips☆410Jun 9, 2026Updated 2 months ago
- Single cell ANANSE Gene-regulatory-network analysis from Seurat objects☆11Nov 12, 2023Updated 2 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆95Jul 18, 2017Updated 9 years ago
- Fast-ish (and correct!) quantile normalization in Python.☆32Aug 6, 2026Updated 3 weeks ago
- Single Cell Epigenome-based Inference of Activity☆19Sep 27, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆129Jun 19, 2026Updated 2 months ago
- Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed in…☆95Jun 23, 2026Updated 2 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆407Aug 14, 2026Updated 2 weeks ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆59May 14, 2026Updated 3 months ago
- R code in workflow of chip-seq analysis☆11Nov 20, 2019Updated 6 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated last year
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆168Jun 14, 2026Updated 2 months ago
- Sequana: a set of Snakemake NGS pipelines☆151Updated this week
- minimal example implementations for bioinformatics workflow managers☆291Oct 27, 2021Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆168Aug 25, 2026Updated last week
- RNA-Seq analysis workflow☆106Jul 14, 2021Updated 5 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 4 years ago
- Data Wrangling and Processing for Genomics☆76Aug 25, 2026Updated last week
- Seurat meets tidyverse. The best of both worlds.☆166Mar 3, 2026Updated 5 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆898Updated this week
- RNA-seq workflow using STAR and DESeq2☆370Dec 18, 2025Updated 8 months ago
- Gene Set Enrichment Analysis in Python☆709Aug 5, 2026Updated 3 weeks ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆254Aug 3, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ATAC-seq snakemake pipeline☆91Feb 13, 2020Updated 6 years ago
- ☆15Aug 17, 2023Updated 3 years ago
- ☆18Oct 22, 2024Updated last year
- toolkit to process gtf files☆17Dec 24, 2021Updated 4 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆18Nov 26, 2019Updated 6 years ago
- ☆167Apr 13, 2026Updated 4 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆231Jul 17, 2026Updated last month
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆255Aug 11, 2026Updated 3 weeks ago
- ☆49Jun 3, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This is the development home of the Snakemake wrapper repository, see☆255Updated this week
- Analysis pipeline for CUT&TAG data☆24Sep 2, 2020Updated 5 years ago
- Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical bi…☆19Sep 1, 2023Updated 3 years ago
- 📊 An R package of RNA-seq workflow☆16May 4, 2022Updated 4 years ago
- 😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎☆144Oct 28, 2025Updated 10 months ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆16Aug 25, 2026Updated last week
- VirusScan Pipeline☆12Feb 7, 2026Updated 6 months ago