Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
☆170Feb 24, 2026Updated last month
Alternatives and similar repositories for seq2science
Users that are interested in seq2science are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- genes and genomes at your fingertips☆410Mar 5, 2026Updated last month
- Single cell ANANSE Gene-regulatory-network analysis from Seurat objects☆10Nov 12, 2023Updated 2 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆94Jul 18, 2017Updated 8 years ago
- Single Cell Epigenome-based Inference of Activity☆19Sep 27, 2023Updated 2 years ago
- Fast-ish (and correct!) quantile normalization in Python.☆31Jun 5, 2025Updated 10 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆127Updated this week
- Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed in…☆91Mar 27, 2026Updated 2 weeks ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆402Mar 30, 2026Updated last week
- R code in workflow of chip-seq analysis☆11Nov 20, 2019Updated 6 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆58Jan 30, 2026Updated 2 months ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated 9 months ago
- Sequana: a set of Snakemake NGS pipelines☆151Updated this week
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆167Oct 2, 2025Updated 6 months ago
- minimal example implementations for bioinformatics workflow managers☆283Oct 27, 2021Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- RNA-Seq analysis workflow☆105Jul 14, 2021Updated 4 years ago
- Data Wrangling and Processing for Genomics☆74Updated this week
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆163Nov 7, 2024Updated last year
- Seurat meets tidyverse. The best of both worlds.☆164Mar 3, 2026Updated last month
- RNA-seq workflow using STAR and DESeq2☆354Dec 18, 2025Updated 3 months ago
- Gene Set Enrichment Analysis in Python☆697Apr 5, 2026Updated last week
- python module to plot beautiful and highly customizable genome browser tracks☆870Jul 10, 2024Updated last year
- ☆15Aug 17, 2023Updated 2 years ago
- ☆18Oct 22, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- toolkit to process gtf files☆17Dec 24, 2021Updated 4 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆18Nov 26, 2019Updated 6 years ago
- ATAC-seq snakemake pipeline☆90Feb 13, 2020Updated 6 years ago
- ☆159Nov 3, 2022Updated 3 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆242Mar 23, 2026Updated 2 weeks ago
- RNA-Seq pipeline☆36Jul 22, 2015Updated 10 years ago
- An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq☆39Mar 20, 2026Updated 3 weeks ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 4 years ago
- Analysis pipeline for CUT&TAG data☆23Sep 2, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This is the development home of the Snakemake wrapper repository, see☆241Updated this week
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆235Mar 27, 2026Updated 2 weeks ago
- A collection of scripts and notes related to genomics and bioinformatics☆223Dec 8, 2025Updated 4 months ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆13Updated this week
- ☆49Mar 12, 2026Updated last month
- Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical bi…☆18Sep 1, 2023Updated 2 years ago
- 📊 An R package of RNA-seq workflow☆15May 4, 2022Updated 3 years ago