Alternatives and similar repositories for seq2science

Users that are interested in seq2science are comparing it to the libraries listed below

• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆106Updated 4 months ago
• igordot / genomics
  A collection of scripts and notes related to genomics and bioinformatics
  ☆219Updated this week
• jsh58 / Genrich
  Detecting sites of genomic enrichment
  ☆194Updated 2 years ago
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆239Updated last week
• GoekeLab / bambu
  Reference-guided transcript discovery and quantification for long read RNA-Seq data
  ☆219Updated last month
• comprna / SUPPA
  SUPPA: Fast quantification of splicing and differential splicing
  ☆281Updated last year
• getzlab / rnaseqc
  Fast, efficient RNA-Seq metrics for quality control and process optimization
  ☆175Updated 11 months ago
• ENCODE-DCC / rna-seq-pipeline
  ☆155Updated 2 years ago
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆225Updated 4 months ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆125Updated 3 years ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆154Updated last year
• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆344Updated 3 months ago
• CompEpigen / figeno
  Tool for plotting sequencing data along genomic coordinates.
  ☆319Updated 3 months ago
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆138Updated 5 years ago
• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆263Updated 3 weeks ago
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆181Updated 2 months ago
• nloyfer / wgbs_tools
  tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
  ☆168Updated 4 months ago
• vanheeringen-lab / gimmemotifs
  Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…
  ☆120Updated this week
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆171Updated 11 months ago
• GuyTeichman / RNAlysis
  Analyze your RNA sequencing data without writing a single line of code
  ☆139Updated 4 months ago
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆217Updated 2 months ago
• haowenz / chromap
  Fast alignment and preprocessing of chromatin profiles
  ☆204Updated 2 weeks ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆117Updated 8 months ago
• gagneurlab / drop
  Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
  ☆155Updated 3 weeks ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆105Updated 4 years ago
• BioOmics / iSeq
  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
  ☆214Updated last month
• FredHutch / SEACR
  SEACR: Sparse Enrichment Analysis for CUT&RUN
  ☆114Updated 2 years ago
• GoekeLab / bioinformatics-workflows
  minimal example implementations for bioinformatics workflow managers
  ☆279Updated 3 years ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆224Updated last year
• GoekeLab / sg-nex-data
  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
  ☆138Updated last month