vanheeringen-lab / seq2science
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
☆156Updated last year
Alternatives and similar repositories for seq2science:
Users that are interested in seq2science are comparing it to the libraries listed below
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆206Updated this week
- Download FASTQ files from SRA or ENA repositories.☆303Updated 4 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆204Updated last week
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆100Updated 3 months ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆164Updated 3 weeks ago
- SUPPA: Fast quantification of splicing and differential splicing☆269Updated 8 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆240Updated 2 weeks ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆197Updated this week
- Tool for plotting sequencing data along genomic coordinates.☆259Updated 3 weeks ago
- Web application to explore the Sequence Read Archive.☆210Updated last month
- RNA-seq workflow using STAR and DESeq2☆336Updated 6 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆211Updated 7 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆203Updated 3 months ago
- Nextflow training material☆142Updated this week
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆261Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆247Updated last year
- Detecting sites of genomic enrichment☆190Updated last year
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆321Updated this week
- RNA-Seq analysis workflow☆104Updated 3 years ago
- Application for making ENCODE Blacklists☆291Updated 3 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆107Updated 2 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆142Updated 5 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆232Updated 3 months ago
- Fast, efficient RNA-Seq metrics for quality control and process optimization☆156Updated 3 months ago
- Generate IGV style locus tracks from bigWig files in R☆154Updated 3 months ago
- parallel fastq-dump wrapper☆287Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆261Updated 2 weeks ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆123Updated 4 years ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆139Updated this week
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆157Updated 2 weeks ago