Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
☆169Jun 22, 2026Updated last month
Alternatives and similar repositories for seq2science
Users that are interested in seq2science are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- genes and genomes at your fingertips☆412Jun 9, 2026Updated last month
- Single cell ANANSE Gene-regulatory-network analysis from Seurat objects☆11Nov 12, 2023Updated 2 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆95Jul 18, 2017Updated 9 years ago
- Fast-ish (and correct!) quantile normalization in Python.☆31Jun 5, 2025Updated last year
- Single Cell Epigenome-based Inference of Activity☆19Sep 27, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆129Jun 19, 2026Updated last month
- Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed in…☆93Jun 23, 2026Updated last month
- Customizable workflows based on snakemake and python for the analysis of NGS data☆406Updated this week
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆58May 14, 2026Updated 2 months ago
- R code in workflow of chip-seq analysis☆11Nov 20, 2019Updated 6 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated last year
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆166Jun 14, 2026Updated last month
- Sequana: a set of Snakemake NGS pipelines☆151Jul 2, 2026Updated 3 weeks ago
- minimal example implementations for bioinformatics workflow managers☆290Oct 27, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆166Updated this week
- RNA-Seq analysis workflow☆106Jul 14, 2021Updated 5 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 4 years ago
- Data Wrangling and Processing for Genomics☆76Updated this week
- Seurat meets tidyverse. The best of both worlds.☆166Mar 3, 2026Updated 4 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆895Jul 10, 2024Updated 2 years ago
- RNA-seq workflow using STAR and DESeq2☆367Dec 18, 2025Updated 7 months ago
- Gene Set Enrichment Analysis in Python☆706Updated this week
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆250Jun 9, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ATAC-seq snakemake pipeline☆91Feb 13, 2020Updated 6 years ago
- ☆15Aug 17, 2023Updated 2 years ago
- ☆18Oct 22, 2024Updated last year
- toolkit to process gtf files☆17Dec 24, 2021Updated 4 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆18Nov 26, 2019Updated 6 years ago
- ☆166Apr 13, 2026Updated 3 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆229Updated this week
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆251Updated this week
- ☆49Jun 3, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This is the development home of the Snakemake wrapper repository, see☆249Updated this week
- Analysis pipeline for CUT&TAG data☆23Sep 2, 2020Updated 5 years ago
- Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical bi…☆18Sep 1, 2023Updated 2 years ago
- 📊 An R package of RNA-seq workflow☆16May 4, 2022Updated 4 years ago
- 😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎☆144Oct 28, 2025Updated 8 months ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆15Jul 6, 2026Updated 2 weeks ago
- VirusScan Pipeline☆12Feb 7, 2026Updated 5 months ago