mbassalbioinformatics / ChIP-APLinks
An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis
☆22Updated 9 months ago
Alternatives and similar repositories for ChIP-AP
Users that are interested in ChIP-AP are comparing it to the libraries listed below
Sorting:
- ☆22Updated 5 months ago
- ☆15Updated 2 years ago
- An R interface to the MEME Suite☆52Updated last month
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- ☆38Updated 2 years ago
- ☆23Updated 4 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆89Updated 4 months ago
- A comprehensive toolkit for mutational signature analysis☆39Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- ☆30Updated 7 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- binned motif enrichment analysis and visualisation☆41Updated last week
- A single cell sequencing read simulator.☆33Updated 9 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Motif manipulation functions for R.☆30Updated 3 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 8 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Workflow for Sequenza, cellularity and ploidy☆19Updated last week
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 weeks ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- RNA editing tests☆17Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- 🧬 Gene analysis toolkit based on R☆57Updated 7 months ago
- ☆13Updated 9 years ago