Alternatives and similar repositories for PLIER:

Users that are interested in PLIER are comparing it to the libraries listed below

• lcmmichielsen / scHPL
  ☆35Updated 2 months ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆40Updated 2 years ago
• ctlab / LinSeed
  Linseed: LINear Subspace identification for gene Expresion Deconvolution
  ☆29Updated this week
• plger / pipeComp
  A R framework for pipeline benchmarking, with application to single-cell RNAseq
  ☆41Updated 3 years ago
• YosefLab / scone
  ☆53Updated 2 months ago
• LieberInstitute / recount3
  Explore and download data from the recount3 project
  ☆34Updated 4 months ago
• willtownes / scrna2019
  supporting code for the multinomial single cell RNA-Seq paper
  ☆51Updated 4 years ago
• NathanSkene / EWCE
  Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
  ☆57Updated 2 months ago
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆30Updated 3 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated 11 months ago
• klarman-cell-observatory / scSVA
  Single-cell Scalable Visualization and Analytics
  ☆25Updated 6 years ago
• shenorrLabTRDF / cellAlign
  ☆41Updated 4 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• pachterlab / LP_2021
  ☆46Updated 3 weeks ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆34Updated 4 years ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆47Updated last year
• DavisLaboratory / singscore
  An R/Bioconductor package that implements a single-sample molecular phenotyping approach
  ☆42Updated 5 months ago
• Teichlab / cellity
  ☆37Updated 8 years ago
• maggiecrow / MetaNeighbor
  ☆50Updated 7 years ago
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆41Updated 8 months ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated 2 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆45Updated last year
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆47Updated last year
• icbi-lab / immune_deconvolution_benchmark
  Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…
  ☆42Updated 4 years ago
• GregorySchwartz / tooManyCellsR
  An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.
  ☆25Updated 5 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆58Updated 5 months ago
• GreenleafLab / chromVARmotifs
  R package with motifs for use with chromVAR
  ☆28Updated 7 years ago
• Katsevich-Lab / sceptre
  An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
  ☆28Updated last month
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆38Updated 2 years ago
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆45Updated 4 months ago