wgmao / PLIERView external linksLinks
Pathway-Level Information Extractor (PLIER): a generative model for gene expression data
☆54Aug 30, 2024Updated last year
Alternatives and similar repositories for PLIER
Users that are interested in PLIER are comparing it to the libraries listed below
Sorting:
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 6 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Sep 24, 2019Updated 6 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Jan 27, 2020Updated 6 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- Feature selection for preserving biological trajectories in single-cell data☆20May 29, 2025Updated 8 months ago
- Landscape Single Cell Entropy☆21Aug 24, 2020Updated 5 years ago
- ☆22Nov 11, 2019Updated 6 years ago
- Reproducibility notebooks for scPoli☆22May 5, 2023Updated 2 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Oct 21, 2024Updated last year
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- 2019 single cell RNA sequencing Workshop @ UCD AND UCSF☆17Nov 25, 2019Updated 6 years ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆15Apr 18, 2022Updated 3 years ago
- ☆16Jun 21, 2018Updated 7 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- ☆85Jul 13, 2020Updated 5 years ago
- Cloud-based scalable and efficient single-cell genomics workflows☆68Jan 23, 2026Updated 3 weeks ago
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…☆15May 25, 2025Updated 8 months ago
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 7 years ago
- ☆29Sep 23, 2019Updated 6 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- Code and simulations using biologically annotated neural networks☆23Aug 23, 2021Updated 4 years ago
- DEPICT code, instructions and an example☆54Dec 10, 2025Updated 2 months ago
- Cell types enrichment analysis☆207May 27, 2024Updated last year
- ☆16Oct 16, 2017Updated 8 years ago
- an R package for deep mining gene co-expression networks in multi-trait expression data☆21Jan 23, 2026Updated 3 weeks ago
- Immunology-related bioinformatics data and tools☆76Apr 30, 2024Updated last year
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Nov 27, 2024Updated last year
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Jul 15, 2015Updated 10 years ago
- Correlation-based approach for identification of endocrine interactions☆13Jan 18, 2022Updated 4 years ago
- Clonal reconstruction from HTS data☆10Oct 27, 2021Updated 4 years ago
- Example vignette for dotdotdot software☆18Apr 9, 2021Updated 4 years ago
- Code used to carry out parameter estimation, correlation estimation, type 1 error analysis, and power analysis for our "Pseudoreplication…☆21Sep 9, 2020Updated 5 years ago
- ☆20Sep 8, 2023Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- ☆19Jul 8, 2021Updated 4 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆81Jun 13, 2025Updated 8 months ago