wgmao / PLIERLinks
Pathway-Level Information Extractor (PLIER): a generative model for gene expression data
☆55Updated last year
Alternatives and similar repositories for PLIER
Users that are interested in PLIER are comparing it to the libraries listed below
Sorting:
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Fast motif matching in R☆46Updated last year
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- ☆37Updated 7 months ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- metadata and data from the database☆41Updated 5 years ago
- Identify and correct invalid gene symbols☆59Updated 11 months ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- ☆44Updated last year
- Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omic…☆41Updated 6 years ago
- ☆55Updated 8 months ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated last year
- ☆12Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated last month
- post-clustering differential expression test☆36Updated 6 years ago
- ☆37Updated 3 weeks ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- ☆25Updated 5 months ago
- ☆43Updated 2 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Updated 3 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago