wgmao / PLIERLinks
Pathway-Level Information Extractor (PLIER): a generative model for gene expression data
☆55Updated last year
Alternatives and similar repositories for PLIER
Users that are interested in PLIER are comparing it to the libraries listed below
Sorting:
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆31Updated last month
- ☆37Updated 7 months ago
- post-clustering differential expression test☆36Updated 6 years ago
- Explore and download data from the recount3 project☆36Updated 2 weeks ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- ☆24Updated 4 months ago
- Experimental design framework for scRNAseq population studies (eQTL and DE)☆46Updated 9 months ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Fast motif matching in R☆46Updated last year
- ☆12Updated last year
- Multi-omics studies are available here☆52Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- Using BCR and expression for sequence embedding☆25Updated last week
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- ☆55Updated 7 months ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- metadata and data from the database☆41Updated 5 years ago
- R package for specialised analysis of single cell data☆39Updated 2 years ago
- Explore the cancer relevance of your gene list☆52Updated 3 weeks ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago