COMBINE-lab / simpleafLinks
A rust framework to make using alevin-fry even simpler
☆57Updated 4 months ago
Alternatives and similar repositories for simpleaf
Users that are interested in simpleaf are comparing it to the libraries listed below
Sorting:
- Genomic coordinates of problematic genomic regions as GRanges☆42Updated last week
- ☆23Updated 6 months ago
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- Ultraperformant reimplementation of SICER☆57Updated 3 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆60Updated 8 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 6 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated last month
- Builds a PEP from SRA or GEO accessions☆53Updated last month
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆44Updated this week
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 3 months ago
- IDR☆31Updated 2 years ago
- ☆38Updated 5 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated last month
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 5 months ago
- An R interface to the MEME Suite☆52Updated 2 months ago
- SingleCell Nanopore sequencing data analysis☆60Updated 3 months ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 3 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆76Updated 2 months ago
- R package containing useful functions for mutational signature analysis☆83Updated last week
- binned motif enrichment analysis and visualisation☆41Updated 3 weeks ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- ☆31Updated 8 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆72Updated 5 months ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year