A rust framework to make using alevin-fry even simpler
☆62Mar 23, 2026Updated 2 weeks ago
Alternatives and similar repositories for simpleaf
Users that are interested in simpleaf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…☆203Mar 21, 2026Updated 3 weeks ago
- ☆16Jan 6, 2025Updated last year
- Read fcs files.☆12Nov 13, 2025Updated 4 months ago
- Just the leafviz parts of Leafcutter☆15Apr 2, 2026Updated last week
- ☆19Mar 19, 2026Updated 3 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆21Dec 26, 2025Updated 3 months ago
- Mapping sequencing data to De Bruijn graphs, fast☆32Mar 21, 2026Updated 3 weeks ago
- Transcription Factor Co-Occurrence using Market Basket analysis☆17Jul 7, 2025Updated 9 months ago
- A library of common biomedical types.☆40Apr 14, 2025Updated 11 months ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- ☆57Aug 11, 2022Updated 3 years ago
- ☆24Mar 4, 2026Updated last month
- A R package for Grade of Membership model and Visualization of counts data:☆33Jan 15, 2021Updated 5 years ago
- Differential expression and allelic analysis, nonparametric statistics☆31Jan 3, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆33Jul 9, 2025Updated 9 months ago
- ☆10May 31, 2022Updated 3 years ago
- Multi-modal single cell analysis pipelines☆62Dec 11, 2025Updated 3 months ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Jul 7, 2025Updated 9 months ago
- ☆15Nov 30, 2023Updated 2 years ago
- Transcript quantification import with automatic metadata detection☆70Mar 3, 2026Updated last month
- Junction centric alternative splicing translator☆22Oct 31, 2022Updated 3 years ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 8 months ago
- An efficient CLI to extract sequences from the SRA☆122Mar 4, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Coarse-graining of large single-cell RNA-seq data into metacells☆98Feb 23, 2026Updated last month
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Sep 3, 2025Updated 7 months ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- ☆15Mar 27, 2026Updated 2 weeks ago
- ☆27Jun 5, 2025Updated 10 months ago
- An R package to process and analyze transcriptomic data☆19Jun 18, 2025Updated 9 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Nov 20, 2025Updated 4 months ago
- R package containing the Cerebro application.☆40Nov 21, 2021Updated 4 years ago
- Create QC and summary reports for Alevin output☆31Jan 27, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆876Mar 11, 2026Updated last month
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆186Mar 11, 2026Updated last month
- What the Package Does (One Line, Title Case)☆13May 16, 2018Updated 7 years ago
- GEO RNA-seq Experiments Processing Pipeline☆22Oct 25, 2019Updated 6 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- Difference in Intercellular Communication from scRNA-seq data☆25Oct 14, 2025Updated 5 months ago
- SingleCell Nanopore sequencing data analysis☆64May 30, 2025Updated 10 months ago