COMBINE-lab / simpleafLinks
A rust framework to make using alevin-fry even simpler
☆57Updated 3 months ago
Alternatives and similar repositories for simpleaf
Users that are interested in simpleaf are comparing it to the libraries listed below
Sorting:
- Genomic coordinates of problematic genomic regions as GRanges☆41Updated 7 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated 2 weeks ago
- ScaleBio Single-cell RNA Nextflow Workflow☆33Updated last month
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- Ultraperformant reimplementation of SICER☆57Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- An R interface to the MEME Suite☆52Updated last month
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Builds a PEP from SRA or GEO accessions☆52Updated 3 weeks ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆44Updated last month
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- ☆22Updated 5 months ago
- IDR☆31Updated 2 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆89Updated 4 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated 2 months ago
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆66Updated last month
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆76Updated 2 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆62Updated 3 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 2 months ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 weeks ago
- scSNV Mapping tool for 10X Single Cell Data☆25Updated last year
- ☆38Updated 5 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- Convert 10x BAM files to the original FASTQs compatible with 10x pipelines☆64Updated 4 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆60Updated 7 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last week