A rust framework to make using alevin-fry even simpler
☆68Oct 25, 2026Updated this week
Alternatives and similar repositories for simpleaf
Users that are interested in simpleaf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…☆220Updated this week
- ☆11Mar 2, 2024Updated 2 years ago
- Mapping sequencing data to De Bruijn graphs, fast☆38Oct 23, 2026Updated last week
- ☆17Jan 6, 2025Updated last year
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆20Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 11 months ago
- Raw rust bindings for htslib☆10Jul 14, 2026Updated 3 months ago
- A pure rust reimplementation of rapid-gzip by Maximilian Knespel and Holger Brunst☆23Aug 10, 2026Updated 2 months ago
- Exact, SIMD-accelerated sequence alignment (Smith-Waterman, Needleman-Wunsch, semi-global, overlap)☆12Aug 10, 2026Updated 2 months ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Create QC and summary reports for Alevin output☆31Jul 21, 2026Updated 3 months ago
- ☆21Dec 26, 2025Updated 10 months ago
- Read fcs files.☆11Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆58Aug 11, 2022Updated 4 years ago
- A library of common biomedical types.☆40Apr 14, 2025Updated last year
- bedtools-like functionality for interval sets in rust☆56Aug 5, 2025Updated last year
- a rust library for high throughput binary encoding of genomic sequences☆12Aug 26, 2026Updated 2 months ago
- Just the leafviz parts of Leafcutter☆16Apr 2, 2026Updated 6 months ago
- Annotation-independent molecular-evidence archives for single-cell RNA-seq☆19Oct 8, 2026Updated 3 weeks ago
- A rust implementation of STAR☆90Oct 22, 2026Updated last week
- an API for intersections of genomic data☆150Oct 4, 2026Updated 3 weeks ago
- Notes on R and Singularity☆12Apr 26, 2018Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Fast long-read RNA-seq mapping to a transcriptome with locally consistent parsing☆21Oct 24, 2026Updated last week
- Transcript quantification import with automatic metadata detection☆72Updated this week
- ☆19Aug 15, 2026Updated 2 months ago
- Fast genomics quality control tools for sequencing data, written in Rust.☆134Updated this week
- R tools for analysis and visualization of single-cell subclustering data☆19Aug 28, 2026Updated 2 months ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆942Updated this week
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆47Sep 3, 2025Updated last year
- ☆15Apr 27, 2022Updated 4 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- GEO RNA-seq Experiments Processing Pipeline☆23Oct 25, 2019Updated 7 years ago
- A Nextflow pipeline for QC and unsupervised clustering of spatial biology data☆16Nov 4, 2025Updated 11 months ago
- Differential Mutation Analysis☆11May 24, 2020Updated 6 years ago
- ☆10May 31, 2022Updated 4 years ago
- An R package for visualising cell-cell interactions☆47Mar 16, 2026Updated 7 months ago
- An efficient CLI to extract sequences from the SRA☆132Jun 12, 2026Updated 4 months ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆193Oct 8, 2026Updated 3 weeks ago