aertslab / SCENICprotocolLinks
A scalable SCENIC workflow for single-cell gene regulatory network analysis
☆165Updated 2 years ago
Alternatives and similar repositories for SCENICprotocol
Users that are interested in SCENICprotocol are comparing it to the libraries listed below
Sorting:
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆231Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆146Updated 3 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆165Updated 5 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆156Updated last month
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆210Updated last year
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- reticulate-free single cell format conversion☆184Updated last month
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆233Updated 7 months ago
- scATAC-seq data analysis tools and papers☆120Updated 2 months ago
- ☆174Updated 4 months ago
- Scissor package☆236Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆130Updated last year
- A tool for detecting somatic variants in single cell data☆212Updated 11 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆214Updated last year
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆167Updated last year
- ☆250Updated last year
- Quantifying metabolism activity at the single-cell resolution☆139Updated 2 months ago
- AUCell: score single cells with gene regulatory networks☆166Updated last year
- Bench-marking classification tools for scRNA-seq data☆188Updated 3 years ago
- A Bayesian model for compositional single-cell data analysis☆173Updated 2 years ago
- Gene set scoring for single-cell data☆160Updated 4 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆118Updated last year
- Detect doublets in single-cell RNA-seq data☆155Updated 4 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆167Updated 5 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆291Updated 2 years ago
- The integration of single cell rank-based gene set enrichment analysis☆131Updated 2 months ago
- Methods to discover gene programs on single-cell data☆145Updated this week
- ☆171Updated this week
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆113Updated 7 months ago