Alternatives and similar repositories for SimilarityRegression

Users that are interested in SimilarityRegression are comparing it to the libraries listed below

• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 3 years ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 4 years ago
• XiaoTaoWang / StripeCaller
  A toolkit for analyzing architectural stripes
  ☆20Updated 10 months ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 7 years ago
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆19Updated last month
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆22Updated 2 months ago
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆22Updated last year
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 5 years ago
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆22Updated 6 years ago
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆20Updated 9 months ago
• flemingtonlab / SpliceTools
  ☆17Updated last year
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆16Updated last year
• yuelab / BUTLRTools
  ☆16Updated 8 years ago
• mdozmorov / RNA-seq
  RNA-seq analysis scripts
  ☆15Updated 3 months ago
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆27Updated 8 months ago
• a2iEditing / deNovo-Detect
  ☆13Updated 3 years ago
• weng-lab / umitools
  A toolset for handling sequencing data with unique molecular identifiers (UMIs)
  ☆15Updated 7 years ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆35Updated 3 years ago
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆19Updated 3 years ago
• dozmorovlab / HiCcompare
  Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…
  ☆23Updated 2 years ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆14Updated 3 years ago
• smw1414 / circlncRNAnet
  An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs
  ☆10Updated 6 years ago
• epigen / open_pipelines
  Pipelines for NGS data preprocessing by the Bock lab and friends
  ☆22Updated 3 years ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆19Updated last year
• Vivianstats / MAAPER
  Model-based analysis of APA using 3' end-linked reads
  ☆10Updated 4 years ago
• qqwang-berkeley / JUM
  A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns
  ☆29Updated 2 years ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated 2 years ago
• 4dn-dcic / pairsqc
  QC report generator for Hi-C pairs file
  ☆12Updated 5 years ago
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆23Updated 2 years ago