Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
☆30Oct 27, 2026Updated this week
Alternatives and similar repositories for maxATAC
Users that are interested in maxATAC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.☆13Nov 12, 2025Updated 11 months ago
- R package IReNA☆31Nov 13, 2024Updated last year
- scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled cluster…☆41Mar 30, 2026Updated 7 months ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆18Feb 22, 2022Updated 4 years ago
- Generate signature matrix from single cell data.☆12Apr 13, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- GSCALite: Gene set for cancer analysis☆23May 25, 2022Updated 4 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Sep 4, 2026Updated last month
- ☆15Jun 4, 2023Updated 3 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆23Oct 8, 2025Updated last year
- Pseudotime analysis for time-series single-cell sequencing and imaging data☆14Mar 13, 2026Updated 7 months ago
- Deep transformer for predicting interchain residue-residue distances of protein complexes☆14Mar 19, 2024Updated 2 years ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- ☆31Mar 18, 2022Updated 4 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆20Oct 25, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆50Feb 25, 2024Updated 2 years ago
- CellDrift: temporal perturbation effects for single cell data☆14Dec 3, 2022Updated 3 years ago
- Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed in…☆96Jun 23, 2026Updated 4 months ago
- An Elder Scrolls neural name generator trained using PyTorch☆10Jan 29, 2019Updated 7 years ago
- Lists of publicly available datasets for machine learning☆16Mar 23, 2024Updated 2 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆19Feb 6, 2026Updated 8 months ago
- Semi-parametric approach for the inference of gene regulatory networks from time series of expression data☆29Jun 23, 2025Updated last year
- Molecular Signatures Database (MSigDB) in a data frame☆15Dec 3, 2018Updated 7 years ago
- ☆14Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 7 years ago
- Make simple competition leaderboard using streamlit in one file of code☆11Nov 4, 2020Updated 5 years ago
- High-definition modeling of chromatin + transcriptomics data☆26Jan 27, 2026Updated 9 months ago
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆33Sep 30, 2025Updated last year
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆32Mar 10, 2023Updated 3 years ago
- inference of transcription factor activity at the single cell level☆29Jul 2, 2026Updated 4 months ago
- Data processing and analyses related to regulatory sequence prediction in yeast.☆14Oct 14, 2026Updated 2 weeks ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆84Sep 3, 2024Updated 2 years ago
- Repository for supplemental material of manuscripts☆19Jun 30, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- scripts and data for the comparison found at http://sjcockell.me/2015/05/18/alignment-free-transcriptome-quantification/☆10May 24, 2015Updated 11 years ago
- CNN architecture for predicting DNA binding sites for Transcription Factors☆53Feb 6, 2019Updated 7 years ago
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 11 years ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Jun 11, 2020Updated 6 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆15Aug 10, 2022Updated 4 years ago
- ☆26Oct 23, 2024Updated 2 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆89Mar 22, 2026Updated 7 months ago