Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
☆30Sep 15, 2026Updated this week
Alternatives and similar repositories for maxATAC
Users that are interested in maxATAC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.☆13Nov 12, 2025Updated 10 months ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆18Feb 22, 2022Updated 4 years ago
- Generate signature matrix from single cell data.☆12Apr 13, 2021Updated 5 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Sep 4, 2026Updated 2 weeks ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆20Oct 25, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled cluster…☆38Mar 30, 2026Updated 5 months ago
- Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed in…☆96Jun 23, 2026Updated 2 months ago
- CellDrift: temporal perturbation effects for single cell data☆14Dec 3, 2022Updated 3 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆15Dec 3, 2018Updated 7 years ago
- High-definition modeling of chromatin + transcriptomics data☆26Jan 27, 2026Updated 7 months ago
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 11 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 6 years ago
- An Elder Scrolls neural name generator trained using PyTorch☆10Jan 29, 2019Updated 7 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆32Mar 10, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- DeepSTF: Predicting transcription factor binding sites by interpretable deep neural networks combining sequence and shape☆11Mar 16, 2023Updated 3 years ago
- Data science in R notes☆15Apr 28, 2025Updated last year
- Snakemake workflow to benchmark scRNA-seq data simulators☆15Aug 10, 2022Updated 4 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆84Sep 3, 2024Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Make simple competition leaderboard using streamlit in one file of code☆11Nov 4, 2020Updated 5 years ago
- CNN architecture for predicting DNA binding sites for Transcription Factors☆53Feb 6, 2019Updated 7 years ago
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆32Sep 30, 2025Updated 11 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆88Mar 22, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ✂️ Pooled CRISPR screen optimization tool☆20Jan 5, 2024Updated 2 years ago
- Fast python code to merge paired-end reads☆13Oct 29, 2021Updated 4 years ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆12Mar 2, 2023Updated 3 years ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- ☆16Apr 9, 2021Updated 5 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆23Mar 30, 2024Updated 2 years ago
- Website about the project WorkflowHub☆14Aug 21, 2026Updated last month
- Toolbox package for organizing and working with TCGA data☆31Jul 2, 2026Updated 2 months ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆36Jun 8, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Large language models as universal biomedical simulators☆20Jul 17, 2024Updated 2 years ago
- A shell to facilitate loading / running CIBERSORT software in structured environments☆25May 9, 2018Updated 8 years ago
- analysis of single cell RNA sequencing data and cell type annotation☆19Jan 2, 2020Updated 6 years ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆24Sep 4, 2026Updated 2 weeks ago
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 7 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆30Mar 15, 2024Updated 2 years ago
- Browser for ExAC consortium data☆11Oct 23, 2017Updated 8 years ago