MiraldiLab / maxATACLinks
Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
☆30Updated 2 months ago
Alternatives and similar repositories for maxATAC
Users that are interested in maxATAC are comparing it to the libraries listed below
Sorting:
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- ☆27Updated last year
- Molecular interactions inference from single-cell multi-omics data☆30Updated 3 weeks ago
- R package for the analysis of single-cell immune repertoires☆43Updated last year
- ☆27Updated 9 months ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- ACTIONet single-cell analysis framework☆44Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- ☆27Updated 8 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated last year
- model-based understanding of single-cell CRISPR screening☆26Updated last year
- Fast motif matching in R☆46Updated 2 years ago
- Code related to the Celligner manuscript☆46Updated 5 years ago
- Identifying tumor cells at the single-cell level using machine learning☆49Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 6 months ago
- ☆23Updated 3 years ago
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆52Updated 11 months ago
- High-definition modeling of chromatin + transcriptomics data☆26Updated last week
- Inference of TCR motifs☆32Updated 7 months ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆40Updated 2 years ago
- Pipeline to run scE2G☆32Updated 3 months ago
- Materials and scripts for building cell type encyclopedia table☆20Updated 2 months ago
- ☆18Updated 3 years ago
- Using BCR and expression for sequence embedding☆25Updated last month
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 3 months ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- ☆69Updated 2 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆44Updated last month
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated last year