Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
☆29Aug 5, 2026Updated last week
Alternatives and similar repositories for maxATAC
Users that are interested in maxATAC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.☆13Nov 12, 2025Updated 9 months ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆18Feb 22, 2022Updated 4 years ago
- Generate signature matrix from single cell data.☆12Apr 13, 2021Updated 5 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15May 3, 2022Updated 4 years ago
- GSCALite: Gene set for cancer analysis☆23May 25, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Chromatin ACcessibility and Transcriptomics Unifying Software☆20Oct 25, 2024Updated last year
- scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled cluster…☆38Mar 30, 2026Updated 4 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆49Feb 25, 2024Updated 2 years ago
- Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed in…☆94Jun 23, 2026Updated last month
- CellDrift: temporal perturbation effects for single cell data☆13Dec 3, 2022Updated 3 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆17Feb 6, 2026Updated 6 months ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- High-definition modeling of chromatin + transcriptomics data☆26Jan 27, 2026Updated 6 months ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 11 years ago
- An Elder Scrolls neural name generator trained using PyTorch☆10Jan 29, 2019Updated 7 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆32Mar 10, 2023Updated 3 years ago
- DeepSTF: Predicting transcription factor binding sites by interpretable deep neural networks combining sequence and shape☆11Mar 16, 2023Updated 3 years ago
- Data science in R notes☆15Apr 28, 2025Updated last year
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆84Sep 3, 2024Updated last year
- Make simple competition leaderboard using streamlit in one file of code☆11Nov 4, 2020Updated 5 years ago
- CNN architecture for predicting DNA binding sites for Transcription Factors☆53Feb 6, 2019Updated 7 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆87Mar 22, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ✂️ Pooled CRISPR screen optimization tool☆20Jan 5, 2024Updated 2 years ago
- Fast python code to merge paired-end reads☆13Oct 29, 2021Updated 4 years ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆12Mar 2, 2023Updated 3 years ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- ☆16Apr 9, 2021Updated 5 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆23Mar 30, 2024Updated 2 years ago
- Website about the project WorkflowHub☆13Aug 3, 2026Updated last week
- Toolbox package for organizing and working with TCGA data☆31Jul 2, 2026Updated last month
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆35Jun 8, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Large language models as universal biomedical simulators☆20Jul 17, 2024Updated 2 years ago
- ☆32Jan 27, 2024Updated 2 years ago
- A shell to facilitate loading / running CIBERSORT software in structured environments☆25May 9, 2018Updated 8 years ago
- analysis of single cell RNA sequencing data and cell type annotation☆19Jan 2, 2020Updated 6 years ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆24Aug 4, 2026Updated last week
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 7 years ago
- Browser for ExAC consortium data☆11Oct 23, 2017Updated 8 years ago