MiraldiLab / maxATAC
Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
☆27Updated last week
Alternatives and similar repositories for maxATAC:
Users that are interested in maxATAC are comparing it to the libraries listed below
- ☆26Updated 3 months ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆27Updated 3 years ago
- model-based understanding of single-cell CRISPR screening☆23Updated 2 months ago
- ☆42Updated 3 months ago
- ☆45Updated 6 months ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆18Updated 7 months ago
- ☆47Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- ☆34Updated 9 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Using BCR and expression for sequence embedding☆19Updated this week
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated 11 months ago
- Molecular interactions inference from single-cell multi-omics data☆22Updated 3 months ago
- ☆29Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆36Updated last month
- ☆25Updated 8 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- scOpen: single-cell open chromatin analysis via NMF modelling☆25Updated 2 years ago
- R package for the analysis of single-cell immune repertoires☆42Updated last week
- Code for scKINETICS (ISMB 2023)☆21Updated last year
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- Identify major cellular signals in bulk transcriptomes☆11Updated 2 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆42Updated last year
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 4 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated last year
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆31Updated 2 years ago
- ☆33Updated 5 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- scWGCNA☆56Updated 2 years ago