Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
☆29Mar 19, 2026Updated last month
Alternatives and similar repositories for maxATAC
Users that are interested in maxATAC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.☆13Nov 12, 2025Updated 5 months ago
- Deep learning for modeling gene regulatory network☆22Sep 5, 2021Updated 4 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Feb 22, 2022Updated 4 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15May 3, 2022Updated 3 years ago
- Generate signature matrix from single cell data.☆12Apr 13, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆27Sep 30, 2025Updated 7 months ago
- GSCALite: Gene set for cancer analysis☆23May 25, 2022Updated 3 years ago
- scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled cluster…☆38Mar 30, 2026Updated last month
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆15Feb 6, 2026Updated 2 months ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Oct 25, 2024Updated last year
- Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed in…☆91Mar 27, 2026Updated last month
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆24Jan 26, 2026Updated 3 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Feb 25, 2024Updated 2 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CellDrift: temporal perturbation effects for single cell data☆13Dec 3, 2022Updated 3 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 6 years ago
- High-definition modeling of chromatin + transcriptomics data☆26Jan 27, 2026Updated 3 months ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 11 years ago
- Fast python code to merge paired-end reads☆13Oct 29, 2021Updated 4 years ago
- An Elder Scrolls neural name generator trained using PyTorch☆10Jan 29, 2019Updated 7 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆33Mar 10, 2023Updated 3 years ago
- DeepSTF: Predicting transcription factor binding sites by interpretable deep neural networks combining sequence and shape☆11Mar 16, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Large language models as universal biomedical simulators☆20Jul 17, 2024Updated last year
- A continually expanding collection of RNA-seq tools☆54Updated this week
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆83Sep 3, 2024Updated last year
- Make simple competition leaderboard using streamlit in one file of code☆11Nov 4, 2020Updated 5 years ago
- ✂️ Pooled CRISPR screen optimization tool☆20Jan 5, 2024Updated 2 years ago
- ☆26Apr 8, 2025Updated last year
- CNN architecture for predicting DNA binding sites for Transcription Factors☆53Feb 6, 2019Updated 7 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆84Mar 22, 2026Updated last month
- Data science in R notes☆15Apr 28, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆34Jan 9, 2024Updated 2 years ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆11Mar 2, 2023Updated 3 years ago
- ☆17Apr 9, 2021Updated 5 years ago
- Website about the project WorkflowHub☆13Feb 12, 2026Updated 2 months ago
- OCR-Phenotype Association from Tissue-Aware Conservation Inference Toolkit☆18Dec 3, 2025Updated 4 months ago
- Toolbox package for organizing and working with TCGA data☆29Mar 26, 2026Updated last month
- ☆19Aug 29, 2025Updated 8 months ago