☆12Sep 20, 2019Updated 6 years ago
Alternatives and similar repositories for getting_started
Users that are interested in getting_started are comparing it to the libraries listed below
Sorting:
- 📝 [Tutorial] RepSeq data mining basics in R☆11Mar 13, 2019Updated 6 years ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 2 years ago
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Aug 29, 2024Updated last year
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 2 years ago
- team lander github repo☆10Aug 7, 2021Updated 4 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆46Nov 24, 2023Updated 2 years ago
- SCelVis - web-based visualization of single-cell data. Demo☆22Mar 20, 2024Updated last year
- ☆19Mar 6, 2019Updated 6 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Mar 24, 2021Updated 4 years ago
- analysis of single cell RNA sequencing data and cell type annotation☆19Jan 2, 2020Updated 6 years ago
- ☆25Aug 5, 2025Updated 6 months ago
- ☆22Apr 6, 2018Updated 7 years ago
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 2 years ago
- Trajectory Inference Based on SNP information.☆24Jun 19, 2024Updated last year
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated this week
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆28Mar 2, 2020Updated 5 years ago
- R vignettes/pkgdown for elementary statistics for a summer course☆14Jan 9, 2025Updated last year
- ☆27Sep 2, 2021Updated 4 years ago
- Individual level Differential Expression Analysis for Single cells☆26Dec 24, 2022Updated 3 years ago
- Metacells - Single-cell RNA Sequencing Analysis☆120Sep 27, 2024Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆63Mar 31, 2022Updated 3 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆31Nov 29, 2019Updated 6 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆74Jan 8, 2025Updated last year
- Functions for single cell data analysis☆32May 28, 2021Updated 4 years ago
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆77May 20, 2021Updated 4 years ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Aug 16, 2023Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Jun 9, 2022Updated 3 years ago
- GWAS gold standards repository☆40Nov 23, 2023Updated 2 years ago
- LLA is a PyTorch library that allows to visualize and analyze loss landscapes of neural networks.☆13Dec 9, 2025Updated 2 months ago
- class materials for MCB517A through UW/Fred Hutch☆12Dec 5, 2019Updated 6 years ago
- Courseworks and dissertation made while studying Smart Buildings and Digital Engineerting at University College London☆10Jan 7, 2022Updated 4 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- A small R package to make sequencing read coverage plots in R.☆40Dec 30, 2025Updated last month
- Calculate DNA methylation age using Horvath 2013 method☆11Aug 25, 2017Updated 8 years ago
- Store collections of experimental data based on TileDB☆12Feb 16, 2026Updated last week
- Upgrade to coloc☆13Aug 1, 2018Updated 7 years ago