vagarwal87 / Xpresso
Predicting gene expression levels from genomic sequences
☆51Updated 4 years ago
Alternatives and similar repositories for Xpresso:
Users that are interested in Xpresso are comparing it to the libraries listed below
- HLA-II ligand predictor.☆38Updated last year
- Knowledge-primed neural networks☆35Updated last year
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆27Updated 3 months ago
- Deep Learning Method to Identify Cancer Associated TCRs☆45Updated 2 years ago
- ☆47Updated 2 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 4 months ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆38Updated 3 years ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆30Updated 4 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆46Updated this week
- code to run sei and obtain sei and sequence class predictions☆96Updated 2 years ago
- ☆37Updated last year
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated 8 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆55Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated this week
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Analysis pipeline for the GUIDE-seq assay.☆23Updated 5 months ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 3 weeks ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated last year
- Code and data used in The Great Repertoire Project☆29Updated 3 years ago
- ☆33Updated 2 years ago
- ☆26Updated last year
- ☆26Updated this week
- Saluki, a method to predict mRNA half-lives from sequence☆22Updated 2 years ago
- ☆33Updated 4 months ago
- predicting peptide and TCR interaction☆20Updated 4 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- iCodon customizes gene expression based on the codon composition☆14Updated last year
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆26Updated last week
- Package to Score Sequences using Rule Set 3☆11Updated 11 months ago