realbigws / DeepBoundLinks
Predict the boundary of transcript start and end from RNA-seq reads alignment
☆11Updated 8 years ago
Alternatives and similar repositories for DeepBound
Users that are interested in DeepBound are comparing it to the libraries listed below
Sorting:
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆14Updated 6 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Updated 9 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Updated 8 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆33Updated 5 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 5 years ago
- TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…☆15Updated 3 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆25Updated 6 years ago
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Updated 6 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 6 years ago
- Understanding sequence conservation with deep learning☆20Updated 8 years ago
- ☆12Updated 6 years ago
- ☆14Updated 5 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆27Updated 8 years ago
- Kdrew's scripts for handling protein complex map data☆14Updated 4 months ago
- Repository for the code for DeepATAC project presented at WCB workshop in ICML2017☆22Updated 8 years ago
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- Deep proteome inference from peptide profiles☆13Updated 5 years ago
- ☆13Updated 6 years ago
- ☆38Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 9 months ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆32Updated 8 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆14Updated 5 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- Computational biology utility scripts☆19Updated 6 months ago