calico / basenji
Sequential regulatory activity predictions with deep convolutional neural networks.
☆410Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for basenji
- A collection of tools for Hi-C data analysis☆549Updated 3 weeks ago
- A deep learning-based tool to identify splice variants☆409Updated 8 months ago
- Biological sequence analysis for the modern age.☆191Updated last week
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆421Updated 3 weeks ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆226Updated this week
- This is the alpha version of the CellOracle package☆313Updated last week
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆142Updated 3 months ago
- predicting expression effects of human genome variants ab initio from sequence☆121Updated 3 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆775Updated 4 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆306Updated last year
- Convolutional neural network analysis for predicting DNA sequence activity.☆257Updated 4 years ago
- Genomic Pre-trained Network☆191Updated last month
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆418Updated 2 months ago
- Gene Set Enrichment Analysis in Python☆568Updated last week
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆386Updated 7 months ago
- Reference mapping for single-cell genomics☆335Updated 3 weeks ago
- Intro to ChIPseq using HPC☆288Updated last year
- Tools to process and analyze deep sequencing data.☆684Updated last month
- Formalizing and benchmarking open problems in single-cell genomics☆321Updated this week
- A python extension for quick access to bigWig and bigBed files☆218Updated 3 months ago
- A tool to find sequencing data and metadata from public databases.☆551Updated 3 months ago
- Deep learning infrastructure for genomics☆255Updated 3 years ago
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆175Updated last month
- 10x Genomics Single Cell Analysis☆366Updated 2 months ago
- a framework for training sequence-level deep learning networks☆373Updated last month
- Collections of library structure and sequence of popular single cell genomic methods☆437Updated last week
- ☆438Updated 4 years ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆491Updated last month
- TF MOtif Discovery from Importance SCOres☆124Updated 9 months ago
- TCR and BCR assembly from RNA-seq data☆283Updated last week