Machine learning methods for DNA sequence analysis.
☆65Jul 20, 2026Updated last month
Alternatives and similar repositories for baskerville
Users that are interested in baskerville are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNA-seq prediction with deep convolutional neural networks.☆261Aug 28, 2025Updated last year
- Analyses related to the Borzoi paper.☆32Dec 14, 2025Updated 8 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆99Jun 10, 2026Updated 2 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆84Jun 4, 2026Updated 2 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆68Aug 10, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Biological sequence analysis for the modern age.☆309Updated this week
- Sequential regulatory activity predictions with deep convolutional neural networks.☆474Jan 15, 2026Updated 7 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- FlashRNA - An Efficient Model for Regulatory Genomics☆18Oct 15, 2025Updated 10 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆364Jun 12, 2026Updated 2 months ago
- EPInformer workflows for gene-expression prediction from DNA sequence, epigenomic signals, and chromatin contacts.☆61Jul 17, 2026Updated last month
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated 8 months ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆17Jun 25, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆29Feb 21, 2023Updated 3 years ago
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 4 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆107Mar 3, 2025Updated last year
- ☆19Oct 21, 2024Updated last year
- AlphaGenome PyTorch port☆159Aug 25, 2026Updated last week
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆92Sep 24, 2025Updated 11 months ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆48Apr 1, 2025Updated last year
- Deep learning models to predict enhancers in different Drosophila embryo tissues☆20Dec 10, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆52Oct 4, 2024Updated last year
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated last year
- ☆21Jun 11, 2026Updated 2 months ago
- Computational Optimization of DNA Activity (CODA)☆69Apr 3, 2025Updated last year
- ☆17May 22, 2025Updated last year
- This repository hosts a minimal version of a Python API for BPNet.☆60Jul 19, 2026Updated last month
- ☆29Nov 7, 2023Updated 2 years ago
- ☆25Aug 20, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆22Aug 28, 2025Updated last year
- Cherimoya is a lightweight sequence-to-function (S2F) model that is small, fast, and easy to use. Now usable by agents.☆56Aug 13, 2026Updated 2 weeks ago
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆84Sep 3, 2024Updated last year
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆574Jun 26, 2026Updated 2 months ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆77Updated this week
- ☆13Nov 19, 2021Updated 4 years ago