spodell / Darkhorse2
DarkHorse2 source code
☆10Updated 2 years ago
Alternatives and similar repositories for Darkhorse2:
Users that are interested in Darkhorse2 are comparing it to the libraries listed below
- Quality control plotting for long reads☆10Updated 10 months ago
- Program for finding horizontal gene transfer using BLAST result☆11Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- Multi-genome synteny block visualization tool☆32Updated 2 months ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆11Updated 2 years ago
- Automatic evaluation of HGTs☆27Updated last month
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 6 months ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 4 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆20Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated last month
- An R package to infer and analyze synteny networks from protein sequences☆29Updated 3 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 6 months ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆16Updated 3 years ago
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 5 years ago
- Domain based annotation of transposable elements☆19Updated last month
- ☆22Updated 7 months ago
- ☆32Updated 4 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 9 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆14Updated 3 years ago
- a broadly applicable tool for automated gene identification and retrieval☆30Updated 3 months ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 9 months ago
- Genome alignment and synteny plots☆29Updated last year
- ContScout sequence contamination filter tool☆20Updated 2 months ago
- Estimating gene family turnover rates by likelihood-based methods☆12Updated 4 years ago