Alternatives and similar repositories for Darkhorse2:

Users that are interested in Darkhorse2 are comparing it to the libraries listed below

• jameslz / ncbi-kit
  Download NCBI assembly genomes with ftp. rsync, ascp
  ☆11Updated 2 years ago
• alexcritschristoph / soil_popgen
  Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes
  ☆16Updated 4 years ago
• mbhall88 / pistis
  Quality control plotting for long reads
  ☆10Updated 9 months ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆28Updated last year
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated 3 weeks ago
• GDKO / AvP
  Automatic evaluation of HGTs
  ☆26Updated 3 weeks ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• TimothyStephens / Dinoflagellate_Annotation_Workflow
  Dinoflagellate Annotation Workflow
  ☆13Updated 2 years ago
• PlantDr430 / FunFinder_Pangenome
  Data analysis of Funannotate and Orthofinder outputs to Pangenome results
  ☆19Updated 4 years ago
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆26Updated last year
• at-cg / RAFT
  ☆22Updated 6 months ago
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆25Updated this week
• wushyer / RGAAT_v2
  Add multiple thread function for genome comparison
  ☆15Updated 3 years ago
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• slimsuite / buscomp
  BUSCOMP: BUSCO Compiler and Comparison tool
  ☆21Updated 5 months ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆34Updated 2 months ago
• AntoineHo / HapPy
  Haploidy and Size Completeness Estimation
  ☆13Updated 10 months ago
• yinlabniu / HGT-Finder
  Program for finding horizontal gene transfer using BLAST result
  ☆11Updated last year
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆33Updated 6 years ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆25Updated 3 years ago
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 4 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 3 months ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 2 years ago
• Sanrrone / GGisy
  Genome-Genome circle synteny
  ☆23Updated last year
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆22Updated 4 months ago
• aesheppard / TETyper
  transposable element typing pipeline
  ☆17Updated 11 months ago
• laxeye / zga
  ZGA prokaryotic genome assembly and annotation pipeline
  ☆12Updated 5 months ago
• kwongj / roary2fripan
  Formats Roary output for viewing in FriPan
  ☆11Updated 6 years ago