spodell / Darkhorse2
DarkHorse2 source code
☆10Updated 2 years ago
Alternatives and similar repositories for Darkhorse2:
Users that are interested in Darkhorse2 are comparing it to the libraries listed below
- Program for finding horizontal gene transfer using BLAST result☆11Updated last year
- Download NCBI assembly genomes with ftp. rsync, ascp☆10Updated 2 years ago
- genomic alignment similarity search tool☆18Updated 10 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 4 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 7 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Quality control plotting for long reads☆10Updated 11 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Formats Roary output for viewing in FriPan☆11Updated 6 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 7 months ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆9Updated 4 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- ☆32Updated 4 years ago
- ☆26Updated 4 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 6 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Estimating gene family turnover rates by likelihood-based methods☆12Updated 4 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Haploidy and Size Completeness Estimation☆13Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated 2 months ago