FunctionLab / ExPectoLinks
predicting expression effects of human genome variants ab initio from sequence
☆127Updated 4 months ago
Alternatives and similar repositories for ExPecto
Users that are interested in ExPecto are comparing it to the libraries listed below
Sorting:
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆156Updated 10 months ago
- code to run sei and obtain sei and sequence class predictions☆105Updated 2 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆94Updated 3 months ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆163Updated 4 months ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆119Updated 3 weeks ago
- TF MOtif Discovery from Importance SCOres☆142Updated last year
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆93Updated 4 years ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆224Updated 2 months ago
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- Biological sequence analysis for the modern age.☆228Updated last week
- A python extension for quick access to bigWig and bigBed files☆232Updated 5 months ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆232Updated last month
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆130Updated last year
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆113Updated last year
- deep residual neural network for classifying the pathogenicity of missense mutations.☆112Updated 3 years ago
- [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data☆138Updated last year
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆75Updated 11 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆80Updated 2 weeks ago
- ☆84Updated 4 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆84Updated 3 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆90Updated 5 years ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆119Updated last week
- R package to access DoRothEA's regulons☆149Updated last year
- 🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!☆137Updated last week
- A scanpy extension to analyse single-cell TCR and BCR data.☆233Updated last week
- RNA-seq prediction with deep convolutional neural networks.☆157Updated 2 weeks ago
- ☆157Updated this week
- Model zoo for genomics☆167Updated 11 months ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆110Updated 9 months ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆74Updated last year