FunctionLab / ExPectoLinks
predicting expression effects of human genome variants ab initio from sequence
☆132Updated 9 months ago
Alternatives and similar repositories for ExPecto
Users that are interested in ExPecto are comparing it to the libraries listed below
Sorting:
- TF MOtif Discovery from Importance SCOres☆155Updated last month
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆168Updated last month
- code to run sei and obtain sei and sequence class predictions☆109Updated 2 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆81Updated last year
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆97Updated 4 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Updated last year
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆186Updated 2 months ago
- A python extension for quick access to bigWig and bigBed files☆235Updated 9 months ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆239Updated 4 months ago
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆85Updated last month
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 4 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆71Updated 2 years ago
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆200Updated 4 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆98Updated 8 months ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆93Updated 8 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆96Updated 6 years ago
- deep residual neural network for classifying the pathogenicity of missense mutations.☆115Updated 4 years ago
- [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data☆141Updated last year
- What you need to process the Quarterly DepMap-Omics releases from Terra☆124Updated last month
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆121Updated last month
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆233Updated last month
- Single-cell ATAC-seq analysis via Latent feature Extraction☆103Updated 2 years ago
- ☆95Updated 4 years ago
- ☆38Updated 3 years ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆39Updated 4 years ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆98Updated 2 months ago