predicting expression effects of human genome variants ab initio from sequence
☆133Jan 28, 2025Updated last year
Alternatives and similar repositories for ExPecto
Users that are interested in ExPecto are comparing it to the libraries listed below
Sorting:
- Code for reproducing the Sei manuscript results☆17Jan 25, 2022Updated 4 years ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆465Jan 15, 2026Updated last month
- a framework for training sequence-level deep learning networks☆399Dec 16, 2024Updated last year
- code to run sei and obtain sei and sequence class predictions☆110Dec 20, 2022Updated 3 years ago
- DeepSEA in TensorFlow☆31May 24, 2017Updated 8 years ago
- ☆10May 16, 2020Updated 5 years ago
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Apr 6, 2021Updated 4 years ago
- TF MOtif Discovery from Importance SCOres☆167Feb 20, 2026Updated last week
- Convolutional neural network analysis for predicting DNA sequence activity.☆267Sep 14, 2020Updated 5 years ago
- ☆14Oct 3, 2017Updated 8 years ago
- Predicting gene expression levels from genomic sequences☆54Jun 24, 2020Updated 5 years ago
- Kipoi's model zoo API☆240Dec 17, 2025Updated 2 months ago
- deep residual neural network for classifying the pathogenicity of missense mutations.☆115Aug 25, 2021Updated 4 years ago
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 2 years ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Oct 7, 2022Updated 3 years ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆175Oct 10, 2025Updated 4 months ago
- A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences☆158Jan 14, 2017Updated 9 years ago
- Explaining the genetic causality for complex diseases by deep association kernel learning☆15May 7, 2021Updated 4 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 2 years ago
- A deep learning package for predicting TF binding☆42Jan 23, 2020Updated 6 years ago
- ☆53Nov 14, 2023Updated 2 years ago
- ☆12Nov 15, 2018Updated 7 years ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆35Dec 5, 2025Updated 2 months ago
- Building classifiers using cancer transcriptomes across 33 different cancer-types☆122Apr 30, 2019Updated 6 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Jan 9, 2020Updated 6 years ago
- A unified array job submitter for LSF, SGE/UGE and Slurm☆32Oct 15, 2024Updated last year
- ☆101Oct 1, 2024Updated last year
- ☆13Dec 18, 2023Updated 2 years ago
- Python library (C++ backend) for degree-preserving network randomization☆14Oct 14, 2019Updated 6 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 9 years ago
- Machine learning methods for DNA sequence analysis.☆57Feb 2, 2026Updated 3 weeks ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Oct 22, 2019Updated 6 years ago
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆16Apr 2, 2019Updated 6 years ago
- NeST-VNN repo☆12Jun 13, 2025Updated 8 months ago
- Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.☆48Updated this week
- A collaboratively written review paper on deep learning, genomics, and precision medicine☆1,272Dec 25, 2022Updated 3 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- ☆14Sep 1, 2024Updated last year
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆16Sep 26, 2017Updated 8 years ago