PyTorch implementation of Basenji2.
☆22Apr 29, 2025Updated last year
Alternatives and similar repositories for basenji2-pytorch
Users that are interested in basenji2-pytorch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- ☆25Aug 20, 2024Updated 2 years ago
- Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tu…☆20Mar 15, 2026Updated 7 months ago
- Jax code for functional genomics ML☆14Mar 5, 2025Updated last year
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆15Jul 14, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆100Jun 10, 2026Updated 4 months ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year
- Dataloader for applying sequence models to personalized genomics☆31Oct 26, 2026Updated last week
- A benchmark suite of five genomics tasks for evaluating DNA foundation models on long-range dependencies.☆15Oct 6, 2026Updated 3 weeks ago
- ☆15May 1, 2026Updated 6 months ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆27Jun 26, 2024Updated 2 years ago
- ☆14Jan 23, 2025Updated last year
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆31May 11, 2026Updated 5 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 4 years ago
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆575Jun 26, 2026Updated 4 months ago
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated 2 years ago
- For fine-tuning Enformer using paired WGS & gene expression data☆32Aug 27, 2025Updated last year
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆88Jun 4, 2026Updated 4 months ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆477Jan 15, 2026Updated 9 months ago
- RNA-seq prediction with deep convolutional neural networks.☆269Sep 30, 2026Updated last month
- We provide pytorch training scripts for enformer and borzoi☆10Jul 11, 2025Updated last year
- ☆12Feb 6, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆19Jun 25, 2025Updated last year
- ☆14Jul 1, 2025Updated last year
- Analyses related to the Borzoi paper.☆33Oct 1, 2026Updated last month
- ☆18Oct 21, 2024Updated 2 years ago
- A factor analysis package☆10Nov 11, 2021Updated 4 years ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆68Dec 2, 2024Updated last year
- Correlation-based approach for identification of endocrine interactions☆14Jan 18, 2022Updated 4 years ago
- ☆19Oct 21, 2024Updated 2 years ago
- Biological sequence analysis for the modern age.☆330Oct 20, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- LangChain, DeepAgents, and LangSmith workshops☆14Updated this week
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆70Oct 23, 2026Updated last week
- ☆35Mar 3, 2024Updated 2 years ago
- PARM: Promoter Activity Regulatory Model☆27Jul 27, 2026Updated 3 months ago
- DeepSEA implements in PyTorch☆25Jun 5, 2019Updated 7 years ago
- ☆27Apr 15, 2025Updated last year
- SCALLOPS (Scalable Library for Optical Pooled Screens) is a comprehensive Python package designed to streamline and scale the analysis of…☆16Updated this week